YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|57610643, gi|...
Organism: Arabidopsis thaliana
Length: 325 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|57610643, gi|....

Description E-value Query
Range
Subject
Range
gi|55670452, gi|... - gi|55670452|pdb|1VLL|B Chain B, Crystal Structure Of Alanine Dehydrogenase (Af1665) From Archaeoglob...
269.0 [0..5] [324..15]

Back

Predicted Domain #1
Region A:
Residues: [1-325]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAALPVFIPA ESFPSILSHE TLINHFRTNL PKHSSTITSP VRQNYTVSSP SSLLLMPSWS  60
   61 SSSSLPYMGV KLVTYFPHNS SQNLPGIHGS YTLFSSTTGQ TLATMDGTVL TLYRTSSVSG 120
  121 LGSKILARDD SQVLIMVGSG ALAPHLIKSH LAAKPSLRRV IIWNRTPQRA QELAETLSKD 180
  181 PQHKEISFDS HDSLDQIIPL GDIISCATNS TVPLVKGEFL KPGTHLDLVG SFSHEMKECD 240
  241 DNAIQRGSVF VDNDTAMIEA GELAGAFERG VIKREDICGN LVELIKGDKE GRKSSTDITV 300
  301 FKSVGSGTVD LLTAQLVHET YLSRC

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 72.154902
Match: 1vllA
Description: Crystal structure of alanine dehydrogenase (AF1665) from Archaeoglobus fulgidus at 2.80 A resolution
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 1.40143066098294 bayes_pls_golite062009
oxidoreductase activity 0.699348997422641 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle