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View Structure Prediction Details

Protein: gi|6633853, gi|4...
Organism: Arabidopsis thaliana
Length: 499 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|6633853, gi|4....

Description E-value Query
Range
Subject
Range
gi|39579415, gi|... - gi|39579415|emb|CAE56721.1| Hypothetical protein CBG24508 [Caenorhabditis briggsae], gi|187040086|em...
197.0 [0..1] [495..31]

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Predicted Domain #1
Region A:
Residues: [1-248]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRVDFSEPEY RNCYHCRDSG ILNTQESEPN NVIGSSITSV PVSSGPFQAL GHASAAIGST  60
   61 STSSPVQSSS SFSFGSAPAA TTSVGVSSTS TPTPISFLPF GYVPPPPPSS SLSGPAQNVP 120
  121 WSISAYSTAG RGVEWAWARP DVAVYPASSS SSSTSTVVFG TTPVSVSSLF GPSQDFPKTT 180
  181 FACCSSTPAP TRCECSFAKP FFGSSPASSS SNLFGPNPST TTASVFGTSA TSGSSLFGPA 240
  241 QHPLSYDS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [249-333]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IGGSAFAGVK TSSPQPLGFN GATTLLPSSH EGQNISSFKP YVDKSHDELR WEYYKKEAKG  60
   61 GSFPAAHASP IGSKPNAVFS PSTVS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [334-499]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TSLFASPSVP DHHQRTNFST TLGNFTGPAF GFFPAAAGGA TTFSSTGFGQ PNAPFPGFDS  60
   61 QFPSAFSSFS TTYPAVSSSV QRPHETGAVS SPAFGCTACG ATSSSSASDH FTFNGATTPP 120
  121 GLFFPTTSSG PMMFGTTLAA QGTTPALQTY PVQGFILLPF AAMSLQ

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle