| Protein: | gi|2924778, gi|1... |
| Organism: | Arabidopsis thaliana |
| Length: | 664 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|2924778, gi|1....
| Description | E-value | Query Range |
Subject Range |
|
|
270.0 | [0..5] | [403..4] |
|
|
261.0 | [0..26] | [370..56] |
|
|
261.0 | [0..2] | [403..3] |
|
Region A: Residues: [1-329] |
1 11 21 31 41 51
| | | | | |
1 MASRVLLILC VPSLFFFLAA STKEYPGQPK IFDVRNYGAR ADSQRDNAFA FTKAWNEACQ 60
61 WSYGRSTVYI PSGIFYLRQV TFSGPCKSSI TFFIRGTLLA PRNPYAINQE EWILFKYVDN 120
121 LTVTGGGLLD GQGSYSWPLN DCNKNTNCRT LAMNIGFAFV KSSKINGLRS INSKMGHFNL 180
181 FSVEDFNITG VTITAPGDSP NTDGIKIGKS SHMQIYNVTI GTGDDCIAIL DGTSNLDISD 240
241 VRCGPGHGIS VGSLGRYKEE KNVQGLTVRN SIINGTTDGL RIKTWAKSVS QISVSNFLYE 300
301 NIQMINVGNP IVIDQQYCPH GQCDSPGKY
|
| Detection Method: |  |
| Confidence: | 36.0 |
| Match: | 1rmgA |
| Description: | RHAMNOGALACTURONASE A FROM ASPERGILLUS ACULEATUS |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [330-402] |
1 11 21 31 41 51
| | | | | |
1 ASHVQIKDVK YNNIWGTSTS KEALKMQCSK TFPCQDVELS NINLHYVGRD GLVTALCENV 60
61 GGSIRGKIVP ANC
|
| Detection Method: | |
| Confidence: | 1.11 |
| Match: | 1czfA |
| Description: | Polygalacturonase |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [403-506] |
1 11 21 31 41 51
| | | | | |
1 RINLFLPSNI ITDSNSTLED KMQGIFQLAN TTQTQRFHQL PLWILWRLWN SRNILYFQRR 60
61 HVPWETTLQL AQMDLQEWNE AVTPSHINSH GTTIRSHIPN WRRP
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.741 | a.177.1 | Sigma2 domain of RNA polymerase sigma factors |
| View | Download | 0.741 | a.112.1 | Description not found. |
| View | Download | 0.692 | a.151.1 | Glutamyl tRNA-reductase dimerization domain |
| View | Download | 0.676 | a.246.3 | Description not found. |
| View | Download | 0.645 | a.118.1 | ARM repeat |
| View | Download | 0.645 | a.118.1 | ARM repeat |
| View | Download | 0.630 | a.7.6 | Ribosomal protein S20 |
| View | Download | 0.628 | a.246.2 | Description not found. |
| View | Download | 0.608 | c.37.1 | P-loop containing nucleoside triphosphate hydrolases |
| View | Download | 0.604 | a.177.1 | Sigma2 domain of RNA polymerase sigma factors |
| View | Download | 0.466 | a.23.1 | HSC20 (HSCB), C-terminal oligomerisation domain |
| View | Download | 0.251 | a.163.1 | Crustacean CHH/MIH/GIH neurohormone |
| View | Download | 0.234 | a.278.1 | Description not found. |
| View | Download | 0.215 | a.74.1 | Cyclin-like |
| View | Download | 0.206 | d.87.2 | CO dehydrogenase flavoprotein C-terminal domain-like |
|
Region A: Residues: [507-664] |
1 11 21 31 41 51
| | | | | |
1 TNGWVKCNVD GSFINGNIPG KGGWIVRDHN GRYEFAGQAI GNCIDNALEC EFQALLMAMQ 60
61 HCWSKGYRRI CFEGDNKEMF DLINGLKMHF GAFNWIRDIL WWASKFEQTQ FQWTNRQNNK 120
121 PADILARTPL QHQFLFANHF WVPRVISFAL HCDYTSSI
|
| Detection Method: | |
| Confidence: | 14.39794 |
| Match: | 2ehgA |
| Description: | No description for 2ehgA was found. |
