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View Structure Prediction Details

Protein: gi|21536493, gi|...
Organism: Arabidopsis thaliana
Length: 126 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|21536493, gi|....

Description E-value Query
Range
Subject
Range
gi|92876184, gi|... - gi|92889442|gb|ABE89874.1| conserved hypothetical protein [Medicago truncatula], gi|92876184|gb|ABE8...
61.0 [0..36] [115..56]
gi|50726253 - gi|50726253|dbj|BAD33829.1| unknown protein [Oryza sativa Japonica Group]
51.0 [0..80] [117..69]

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Predicted Domain #1
Region A:
Residues: [1-126]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVAHSLVPLS PAAHAARLSS PSPRSLPQAP PVVLAVPPIN RRTILVGLGG ALWSWNALAA  60
   61 KEEAMAAARR PPPPPPKEKK DPTVTGVQAK VLASKKRKEE MKASIAKLRE KGKPVVEAKP 120
  121 SSSSSE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.574 d.93.1 SH2 domain
View Download 0.411 d.93.1 SH2 domain
View Download 0.411 d.93.1 SH2 domain
View Download 0.398 d.93.1 SH2 domain
View Download 0.398 d.93.1 SH2 domain
View Download 0.387 d.93.1 SH2 domain
View Download 0.304 d.129.3 Bet v1-like
View Download 0.208 c.95.1 Thiolase-like


YRC Informatics Platform - Version 3.0
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