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View Structure Prediction Details

Protein: CDPKA_ARATH
Organism: Arabidopsis thaliana
Length: 545 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CDPKA_ARATH.

Description E-value Query
Range
Subject
Range
gi|28416563 - gi|28416563|gb|AAO42812.1| At1g18890 [Arabidopsis thaliana]
453.0 [0..1] [545..1]

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Predicted Domain #1
Region A:
Residues: [1-361]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGNCNACVRP DSKESKPSSK PKKPNRDRKL NPFAGDFTRS PAPIRVLKDV IPMSNQTQIS  60
   61 DKYILGRELG RGEFGITYLC TDRETHEALA CKSISKRKLR TAVDIEDVRR EVAIMSTLPE 120
  121 HPNVVKLKAS YEDNENVHLV MELCEGGELF DRIVARGHYT ERAAAAVART IAEVVMMCHS 180
  181 NGVMHRDLKP ENFLFANKKE NSPLKAIDFG LSVFFKPGDK FTEIVGSPYY MAPEVLKRDY 240
  241 GPGVDVWSAG VIIYILLCGV PPFWAETEQG VALAILRGVL DFKRDPWPQI SESAKSLVKQ 300
  301 MLDPDPTKRL TAQQVLAHPW IQNAKKAPNV PLGDIVRSRL KQFSMMNRFK KKVLRVIAEH 360
  361 L

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 76.154902
Match: 2bdwA
Description: Crystal Structure of the Auto-Inhibited Kinase Domain of Calcium/Calmodulin Activated Kinase II
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [362-545]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SIQEVEVIKN MFSLMDDDKD GKITYPELKA GLQKVGSQLG EPEIKMLMEV ADVDGNGFLD  60
   61 YGEFVAVIIH LQKIENDELF KLAFMFFDKD GSTYIELDEL REALADELGE PDASVLSDIM 120
  121 REVDTDKDGR INYDEFVTMM KAGTDWRKAS RQYSRERFKS LSINLMKDGS LHLHDALTGQ 180
  181 TVPV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 18.154902
Match: 2aaoA
Description: Regulatory apparatus of Calcium Dependent protein kinase from Arabidopsis thaliana
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle