| Protein: | LDL2_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 746 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LDL2_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
435.0 | [0..46] | [727..71] |
|
|
384.0 | [0..51] | [739..88] |
|
|
383.0 | [0..51] | [739..88] |
|
|
291.0 | [0..38] | [622..87] |
|
Region A: Residues: [1-157] |
1 11 21 31 41 51
| | | | | |
1 MNSPASDETA PRRNRRKVSR KNYDENAMDE LIEKQLGGKA KKKYRTKQDL EKETETEALI 60
61 ALSVGFPIDE LLEEEIRAGV VRELGGKEQN DYIVVRNHIV ARWRGNVGIW LLKDQIRETV 120
121 SSDFEHLISA AYDFLLFNGY INFGVSPLFA PYIPEEG
|
| Detection Method: |  |
| Confidence: | 27.30103 |
| Match: | 1h7xA |
| Description: | Dihydropyrimidine dehydrogenase, N-terminal domain; Dihydropyrimidine dehydrogenase, domain 4; Dihydropyrimidine dehydrogenase, domain 3; Dihydropyrimidine dehydrogenase, domain 2; Dihydropyrimidine dehydrogenase, C-terminal domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [158-544] |
1 11 21 31 41 51
| | | | | |
1 TEGSVIVVGA GLAGLAAARQ LLSFGFKVLV LEGRSRPGGR VYTQKMGGKD RFAAVELGGS 60
61 VITGLHANPL GVLARQLSIP LHKVRDNCPL YNSEGVLVDK VADSNVEFGF NKLLDKVTEV 120
121 REMMEGAAKK ISLGEVLETL RVLYGVAKDS EERKLFDWHL ANLEYANAGC LSNLSAAYWD 180
181 QDDPYEMGGD HCFLAGGNWR LINALAEGLP IIYGKSVDTI KYGDGGVEVI SGSQIFQADM 240
241 ILCTVPLGVL KKRSIKFEPE LPRRKQAAID RLGFGLLNKV AMLFPSVFWG DELDTFGCLN 300
301 ESSINRGEFF LFYAYHTVSG GPALVALVAG EAAQRFECTE PSVLLHRVLK KLRGIYGPKG 360
361 VVVPDPIQTV CTRWGSDPLS YGSYSHV
|
| Detection Method: | |
| Confidence: | 15.69897 |
| Match: | 2bi7A |
| Description: | udp-galactopyranose mutase from Klebsiella pneumoniae oxidised FAD |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [545-614] |
1 11 21 31 41 51
| | | | | |
1 RVGSSGVDYD ILAESVSNRL FFAGEATTRQ HPATMHGAYL SGLREASKIL HVANYLRSNL 60
61 KKPVQRYSGV
|
| Detection Method: | |
| Confidence: | 46.0 |
| Match: | 2v1dA |
| Description: | No description for 2v1dA was found. |
|
Region A: Residues: [615-746] |
1 11 21 31 41 51
| | | | | |
1 NINVLEDMFK RPDIAIGKLS FVFNPLTDDP KSFGLVRVCF DNFEEDPTNR LQLYTILSRE 60
61 QANKIKELDE NSNESKLSCL MNTLGLKLMG ANSVLDTGGA LISVIANARR GRSRSHVVAG 120
121 QCNLPLNPLH FN
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
