YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|67633432, gi|...
Organism: Arabidopsis thaliana
Length: 404 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|67633432, gi|....

Description E-value Query
Range
Subject
Range
gi|2924778, gi|1... - gi|2924778|gb|AAC04907.1| putative polygalacturonase [Arabidopsis thaliana], pir||A84742 probable po...
313.0 [0..1] [402..1]

Back

Predicted Domain #1
Region A:
Residues: [1-404]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSIASTFKA LCLSFLFIAV ASRPTIRPKV FNVRRYGSRP DGKTDNANAF TSVWKRACTR  60
   61 ISGSSKIYVP KGTFYLGGVE FVGPCKNPIE FVIDGTLLAP ANPRDIKQDT WINFRYINNL 120
  121 SISGSGTLDG QGKYSWPLND CHKNTNCPKL AMTMGFAFVN NSRIKDITSL NSKMGHFNFF 180
  181 SVHRFNITGV TITAPGDSPN TDGIKMGSCS NIHISNTNIG TGDDCIAILS GTTNLDISNI 240
  241 KCGPGHGISV GSLGKNKDEK DVKHLTVRDT VFNGTSDGIR IKTWESSASK IVVSNFIYEN 300
  301 IQMIDVGKPI NIDQKYCPHP PCEHEKKGES HVQIQDIKLK NIYGTSNNIV AVNLQCSKSF 360
  361 PCKNVELIDI NLKHTGLEKG HSTAMCENVD GSVRSKMVPQ HCLD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 33.154902
Match: 1bheA
Description: POLYGALACTURONASE FROM ERWINIA CAROTOVORA SSP. CAROTOVORA
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
polygalacturonase activity 3.63113788404352 bayes_pls_golite062009
catalytic activity 0.67288476528593 bayes_pls_golite062009
hydrolase activity 0.329563804802467 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle