YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: AB14C_ARATH
Organism: Arabidopsis thaliana
Length: 1539 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

No multiple sequence alignment data found for AB14C_ARATH.

Predicted Domain #1
Region A:
Residues: [1-158]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRWLSSTWLS DLSCSSSSVI EPSSSLPAPI QWLRFILLSP CPQRLLSSTV DVLFLLILFF  60
   61 FAIQKLCSSS SSRTNGEADI TKPLLGRRTR TRTTGLFKTT VVVTIVLSFC SLVLCVSAFF 120
  121 TTRTKLKLVD TLFWLIHAVT NVVIAVLVLH LKRFASPS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [159-351]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HPLTLRIYWV FNFVVTTLFT VSGILHLLSD DPAAASLRAD DVASFISFPL TAVLLLVSIK  60
   61 GSTGVVVTTS NVTAPAKSND VVVEKSENVS LYASASFISK TFWLWMNPLL RKGYKSPLNL 120
  121 DQVPTLSPEH RAEKLATLFE SKWPKPQENS RNPVRTTLIR CFWKEIAFTA VLAIIRLSVI 180
  181 YVGPVLIQSF VDF

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [352-414]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TSGKRSSPSQ GYYLVLILLI AKFVEVLSTH QFNFNSQKLG MLIRSTLITA LYKKGLKLTG  60
   61 SAR

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [415-637]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QNHGVGQIVN YMAVDAQQLS DMMLQLHAIW LMPLQVAAAI VLLYNTLGPS VVTTVIGLTG  60
   61 IFVFILLGTK RNNRYQFSLM MNRDSRMKAT NEMLNYMRVI KFQAWEDHFN ERILKFREME 120
  121 FGWLSKFLYS IAGNIIVLWS TPVLISALTF TTAVFLGVKL DAGTVFTTTT IFKILQEPIR 180
  181 TFPQSMISLS QAMISLGRLD AYMMSRELSE ETVERSQGCD GNV

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [638-888]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AVEIKDGSFS WDDEDDEPAI ENINFEVKKG ELAAIVGTVG SGKSSLLASV LGEMHKLSGK  60
   61 VRVCGTTAYV AQTSWIQNGT VQDNILFGLP MNRSKYNEVL KVCCLEKDMQ IMEFGDQTEI 120
  121 GERGINLSGG QKQRIQLARA VYQESDVYLL DDVFSAVDAH TGSDIFKKCV RGALKGKTIL 180
  181 LVTHQVDFLH NVDRILVMRD GMIVQSGKYD ELVSSGLDFG ELVAAHETSM ELVEAGSASA 240
  241 TAANVPMASP I

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 67.522879
Match: 2cbzA
Description: No description for 2cbzA was found.

Predicted Domain #6
Region A:
Residues: [889-959]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TQRSISIESP RQPKSPKVHR TTSMESPRVL RTTSMESPRL SELNDESIKS FLGSNIPEDG  60
   61 SRLIKEEERE V

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #7
Region A:
Residues: [960-1539]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GQVSFQVYKL YSTEAYGWWG MILVVFFSVA WQASLMASDY WLAYETSAKN EVSFDATVFI  60
   61 RVYVIIAAVS IVLVCLRAFY VTHLGLKTAQ IFFKQILNSL VHAPMSFFDT TPSGRILSRA 120
  121 STDQTNVDIF IPFMIGLVAT MYTTLLSIFI VTCQYAWPTV FFIIPLGWLN IWYRGYYLAS 180
  181 SRELTRLDSI TKAPVIHHFS ESIAGVMTIR AFKKQPMFRQ ENVKRVNANL RMDFHNNGSN 240
  241 EWLGFRLELI GSWVLCISAL FMVMLPSNII KPENVGLSLS YGLSLNGVLF WAIYLSCFIE 300
  301 NKMVSVERIK QFTDIPAEAK WEIKESRPPP NWPYKGNIRL EDVKVRYRPN TPLVLKGLTI 360
  361 DIKGGEKIGV VGRTGSGKST LIQVLFRLVE PSGGKIIIDG IDICTLGLHD LRSRFGIIPQ 420
  421 EPVLFEGTVR SNIDPTEKYS DEEIWKSLER CQLKDVVASK PEKLDSLVAD NGENWSVGQR 480
  481 QLLCLGRVML KRSRILFLDE ATASVDSQTD AMIQKIIRED FSDCTIISIA HRIPTVMDCD 540
  541 RVLVIDAGKA KEYDSPVRLL ERQSLFAALV QEYALRSAGI 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 159.0
Match: 3b5wA
Description: No description for 3b5wA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle