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View Structure Prediction Details

Protein: gi|18402825, gi|...
Organism: Arabidopsis thaliana
Length: 95 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|18402825, gi|....

Description E-value Query
Range
Subject
Range
gi|21555114, gi|... - gi|28827300|gb|AAO50494.1| unknown protein [Arabidopsis thaliana], gi|26452450|dbj|BAC43310.1| unkno...
99.0 [0..1] [75..1]

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Predicted Domain #1
Region A:
Residues: [1-95]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDGGLGTMLM KVALFALVQG LVYLILLKSS RVFARSNSLK RAYSFRPMRS VSIRRILAAL  60
   61 QDIPAGDDMS PSSNGSSSSS QDEAATTTTT SSSPS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.273 a.48.3 Conserved domain common to transcription factors TFIIS, elongin A, CRSP70
View Download 0.225 a.64.2 Bacteriocin AS-48
View Download 0.211 a.60.1 SAM/Pointed domain
View Download 0.201 a.5.2 UBA-like
View Download 0.201 a.6.1 Putative DNA-binding domain


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle