YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|15420626, gi\|...
Organism:	Arabidopsis thaliana
Length:	342 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15420626, gi|....

Description	E-value	Query Range	Subject Range
gi\|125561643 - gi\|125561643\|gb\|EAZ07091.1\| hypothetical protein OsI_29338 [Oryza sativa Indica Group] gi\|125603515, gi... - gi\|50946039\|ref\|XP_482547.1\| MYB27 protein [Oryza sativa (japonica cultivar-group)], gi\|42409479\|dbj...	227.0	[0..1]	[338..1]
gi\|56069813 - gi\|56069813\|gb\|AAV70655.1\| MYB transcription factor MIXTA-like 2 [Antirrhinum majus]	217.0	[0..1]	[331..1]
gi\|34147926 - gi\|34147926\|gb\|AAQ62541.1\| R2R3-MYB transcription factor [Pinus taeda]	207.0	[0..1]	[334..1]
gi\|28610112, gi\|... - gi\|28610112\|gb\|AAO48738.1\| R2R3 Myb transcription factor MYB-IF25 [Zea mays], gi\|162462702\|ref\|NP_00...	202.0	[0..1]	[323..1]
gi\|89058634, gi\|... - gi\|89058634\|gb\|ABD60296.1\| R2R3-MYB transcription factor MYB1 [Picea glauca], gi\|147744702\|gb\|ABQ512...	201.0	[0..1]	[330..1]
gi\|13346188 - gi\|13346188\|gb\|AAK19616.1\|AF336283_1 GHMYB25 [Gossypium hirsutum]	198.0	[0..1]	[306..1]
gi\|28628947 - gi\|28628947\|gb\|AAO49410.1\|AF485892_1 MYB1 [Dendrobium sp. XMW-2002-1]	198.0	[0..1]	[338..1]
gi\|7268531, gi\|2... - pir\|\|A71448 probable MYB transcription factor - Arabidopsis thaliana, gi\|7268531\|emb\|CAB78781.1\| MYB...	197.0	[0..1]	[331..1]
gi\|114609513 - gi\|114609513\|ref\|XP_518756.2\| PREDICTED: v-myb myeloblastosis viral oncogene homolog [Pan troglodyte...	195.0	[0..3]	[324..521]

Back

Predicted Domain #1

Region A:
Residues: [1-195]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRAPCCEKI GLKRGRWTAE EDEILTKYIQ TNGEGSWRSL PKKAGLLRCG KSCRLRWINY  60
   61 LRRDLKRGNI TSDEEEIIVK LHSLLGNRWS LIATHLPGRT DNEIKNYWNS HLSRKIYAFT 120
  121 AVSGDGHNLL VNDVVLKKSC SSSSGAKNNN KTKKKKKGRT SRSSMKKHKQ MVTASQCFSQ 180
  181 PKELESDFSE GGQNG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	36.30103
Match:	1h88C
Description:	c-Myb, DNA-binding domain
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [196-342]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NFEGESLGPY EWLDGELERL LSSCVWECTS EEAVIGVNDE KVCESGDNSS CCVNLFEEEQ  60
   61 GSETKIGHVG ITEVDHDMTV EREREGSFLS SNSNENNDKD WWVGLCNSSE VGFGVDEELL 120
  121 DWEFQGNVTC QSDDLWDLSD IGEITLE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.491	a.24.11	Bacterial GAP domain
View	Download	0.491	a.24.11	Bacterial GAP domain
View	Download	0.487	d.129.3	Bet v1-like
View	Download	0.456	d.129.3	Bet v1-like
View	Download	0.401	b.55.1	PH domain-like
View	Download	0.369	a.72.1	Functional domain of the splicing factor Prp18
View	Download	0.369	a.72.1	Functional domain of the splicing factor Prp18
View	Download	0.368	b.60.1	Lipocalins
View	Download	0.303	a.24.11	Bacterial GAP domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits