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View Structure Prediction Details

Protein: gi|2853080, gi|7...
Organism: Arabidopsis thaliana
Length: 1167 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for gi|2853080, gi|7....

Predicted Domain #1
Region A:
Residues: [1-191]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATSSSVVSS VPQQHQVFLN FRGDELRNNF VSHLDKALRG KQINVFIDEA VEKGENLDNL  60
   61 FKEIEKSRIA LAIISQKYTE SKWCLNELVK MKELEGKLVT IPIFYNVEPA TVRYQKEAFG 120
  121 AALTKTQEND SDGQMKKWKE ALTYVSLLVG FPFNSKSKEK ETTLIDKIVD AVLQKLSKIS 180
  181 SEESTSGSVD Q

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 49.60206
Match: PF01582.12
Description: No description for PF01582.12 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [192-595]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GRGEEVEEAK ADKISGLNQR LKELEEKVAI TGDKRDETRI VEVVGMPGIG KSTLLKAFYE  60
   61 TWKTRFLSSA LLQNISELVK AMGLGRLTGM LLKELLPDEN IDEETYEPYK EKLLKNTVFI 120
  121 VLDGISDETH IQKLLKDHRK WAKKGSKIVI ARRAVTRDLL HEDSMVRYTY FVPLLSHRDG 180
  181 LNHFCHYAFR HFAAHQNNKE AFMKESKEFV RYARGHPLIL KLLGEELREK SLSYWEEKLK 240
  241 SLPKSLSQNI RDRVLQVTYD ELSQVQKDAF LDIACFRSHD LVYVKSLLDS SGPAFSKATV 300
  301 TIDALKDMFM IYISDSRVEM HDLLYTFAME LGPEARDDDG RGRHRIWHHH NQDNKGRLNR 360
  361 LLKRPGGSTS VRSFFLDMYV MKTDVTLGTD YLKNMRNLRY LKFY

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 11.0
Match: 1z6tA
Description: Structure of the apoptotic protease-activating factor 1 bound to ADP
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [596-1167]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSHCPQECTP KENIHIPGEL ELPLEEVRCL HWLNFPKDEL PQDFIPKNLV DLKLPYSKIR  60
   61 QIWREEKDAP KLRWVDLNHS SKLENLSGLS QALNLERLNL EGCTALKTLL LGPENMASLV 120
  121 FLNLKGCTGL ESLPKINLRS LKTLILSNCS NLEEFWVISE TLYTLYLDGT AIKTLPQDMV 180
  181 KLTSLVKLYM KDCEMLVKLP EEFDKLKVLQ ELVCSGCKRL SSLPDVMKNM QCLQILLLDG 240
  241 TAITKIPHIS SLERLCLSRN EKISCLSNDI RLLSQLKWLD LKYCTKLVSI PELPTNLQCL 300
  301 DANGCESLTT VANPLATHLP TEQIHSTFIF TNCDKLDRTA KEGFVPEALF STCFPGCEVP 360
  361 SWFCHEAVGS VLKLNLLPHW NENRFVGIAL CAVVGSLPNC QEQTNSCSVT CTFNIASKDS 420
  421 KKGDPYKISF DRLVGRWNKH GNKLDKKGNK LKKTESDHVF ICYTRCSNSI KCLQDQHSGT 480
  481 CTPTEAFLEF GVTDKESRLE VLKCGLRLVY ASDEPQKTNS DMDLSLSSSD STPTRNGSSN 540
  541 TTTSSGSVST NTIREEDSNI LHEAQSQNGR GL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 26.0
Match: 3cigA
Description: No description for 3cigA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle