YRC Public Data Repository - Protein Structure Prediction

Protein:	TA14B_ARATH
Organism:	Arabidopsis thaliana
Length:	268 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TA14B_ARATH.

Description	E-value	Query Range	Subject Range
gi\|92870687 - gi\|92870687\|gb\|ABE79958.1\| YEATS [Medicago truncatula]	270.0	[0..1]	[267..1]
gi\|218197523 - gi\|218197523\|gb\|EEC79950.1\| hypothetical protein OsI_21545 [Oryza sativa Indica Group] gi\|115466266, gi... - gi\|55296994\|dbj\|BAD68469.1\| putative TAF14b [Oryza sativa Japonica Group], gi\|55296453\|dbj\|BAD68649....	258.0	[0..32]	[266..72]
gi\|39940124, gi\|... - gi\|39940124\|ref\|XP_359599.1\| hypothetical protein MGG_05178 [Magnaporthe grisea 70-15], gb\|EAA52486....	256.0	[0..29]	[266..1]
AF9_EMENI - Protein AF-9 homolog OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M... AF9_EMENI - Protein AF-9 homolog OS=Emericella nidulans GN=yaf9 PE=3 SV=1	249.0	[0..31]	[264..2]
AF9_GIBZE - Protein AF-9 homolog OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=YA... AF9_GIBZE - Protein AF-9 homolog OS=Gibberella zeae GN=YAF9 PE=3 SV=1	248.0	[0..29]	[266..1]
gi\|4406818, gi\|1... - gi\|4406818\|gb\|AAD20126.1\| unknown protein [Arabidopsis thaliana], gi\|39545910\|gb\|AAR28018.1\| TAF14 [...	237.0	[0..5]	[201..1]
gi\|220698972, gi... - gi\|238485710\|ref\|XP_002374093.1\| histone acetyltransferase subunit (Yaf9), putative [Aspergillus fla... gi\|169771703 - gi\|169771703\|ref\|XP_001820321.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83768180 - gi\|83768180\|dbj\|BAE58319.1\| unnamed protein product [Aspergillus oryzae]	235.0	[0..31]	[263..2]
gi\|114197706, gi... - gi\|115492437\|ref\|XP_001210846.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	233.0	[0..31]	[263..45]
gi\|157132764, gi... - gi\|157132764\|ref\|XP_001662633.1\| YEATS domain containing protein 4 [Aedes aegypti], gi\|108871078\|gb\|...	232.0	[0..38]	[258..14]
gi\|9755857 - gi\|9755857\|emb\|CAC01935.1\| NuBI-1 protein [Homo sapiens]	232.0	[0..38]	[261..11]

Back

Predicted Domain #1

Region A:
Residues: [1-150]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTNSSSSKKQ AQDQPETSEP TLKSLKTKMT KSDEKQKKLK DIEISVPIVY GNVAFWLGKK  60
   61 ASEYQSHKWA VYVRGATNED ISVVVKKVVF QLHSSFNSPT RVIEEPPFEV SESGWGEFEI 120
  121 AMTLHFHSDV CDKPLSLYHH LKLYPEDESG

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	47.823909
Match:	PF03366.3
Description:	No description for PF03366.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [151-268]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PLTMKKPVVV ESYDEIVFPD PSESFLARVQ NHPALTFPRL PSGYNLPAPM QVEDTGKKKR  60
   61 GDTKDHSLGQ WFMSFSEADE LLQLAAARQQ VQAHIAKLRR QISLLEGQNQ TVKTGSDL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits