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View Structure Prediction Details

Protein: MSL4_ARATH
Organism: Arabidopsis thaliana
Length: 881 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for MSL4_ARATH.

Predicted Domain #1
Region A:
Residues: [1-240]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVDSTDQRR DFVVRIDGED NGDSEKFWRE SSINFWHNDK SSKPPGGEED DGSFDFMRRS  60
   61 SEKSEEPDPP SKLINQFLNK QKASGDEISL DMEANMPELQ KNTVPPLSST AVSGSASPVT 120
  121 APVTASYRNG TGDAIRRRQN RVTLSPSVKD GDSSEDEENR VDGSEVVKCT SNRSTMRTKT 180
  181 LMKMKTRSRL MDPPTPTYPD MVSGRTPRSG NLNPGFSGRN TKPGTPNQGG SKDLEEEEDP 240
  241 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 4.0
Match: 1y0fA
Description: No description for 1y0fA was found.

Predicted Domain #2
Region A:
Residues: [241-452]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FSEEDLPEGL RKEKICVWVI IEWIFLILII ASLICSLVIP YLRGKTLWDL ALWKWEVMVL  60
   61 VLICGRLVSS WIVKLFVYFV ESNFLWRKKV LYFVYGIRKP VQNCLWLGLV LIAWHFLFDK 120
  121 KVEREMRSTV LKYVTKVLIC LLVAVIIWLI KTLLVKVLAS SFHMSTYFDR IQESLFTQYV 180
  181 IETLSGPPRI EIHIEEEKVA NDVKTFEIVG RK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [453-578]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LSPLGPKAVS SPPQVTVGSG RLQKSPSRVG KSPVLSRSGS KKEGGEEGIR IDHLQRMNTK  60
   61 NVSAWKMKKL MNVIKKGTLS TLDEQIQDTT TQEDDKATQI RSEFEAKLAA RKIFQNVAEP 120
  121 GSRYIY

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [579-881]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEDFMRFLSE DESERAMDLF EGASECHKIS KSCLKNWVVN AFRERRALAL TLNDTKTAVN  60
   61 RLHRIVDVLV SIVILIIWLL ILGIATTKFL LVISSQLLLV VFVFGNSCKT IFEAVIFVFV 120
  121 MHPFDVGDRC EIDGVQMIVE EMNILTTVFL RFDNQKIVYP NSLLGTKPIA NYYRSPDMQD 180
  181 AIEFFVHIAT PPEKTTALRQ RILSYVDNKK DHWHPSPMIV FRDMCGLNSV KIAMWPTHKM 240
  241 NHQNMGERYV RRGQLLEEIG RLCRELDIEY RLYPLNINVK SLPAATPITS DRIPPSWNQQ 300
  301 RSV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 63.522879
Match: 2oauA
Description: No description for 2oauA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle