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View Structure Prediction Details

Protein: gi|18401429, gi|...
Organism: Arabidopsis thaliana
Length: 299 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|18401429, gi|....

Description E-value Query
Range
Subject
Range
AGUB_SOLLC - N-carbamoylputrescine amidase OS=Solanum lycopersicum GN=CPA PE=2 SV=1
293.0 [0..8] [298..6]

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Predicted Domain #1
Region A:
Residues: [1-299]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METEGRRREV VVSSLQFACS DDISTNVAAA ERLVREAHAK GANIILIQEL FEGYYFCQAQ  60
   61 REDFFKRAKP YKNHPTIARM QKLAKELGVV IPVSFFEEAN TAHYNSIAII DADGTDLGIY 120
  121 RKSHIPDGPG YQEKFYFNPG DTGFKVFQTK FAKIGVAICW DQWFPEAARA MVLQGAEILF 180
  181 YPTAIGSEPQ DQGLDSRDHW RRVMQGHAGA NVVPLVASNR IGKEIIETEH GPSQITFYGT 240
  241 SFIAGPTGEI VAEADDKSEA VLVAQFDLDM IKSKRQSWGV FRDRRPDLYK VLLTMDGNL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 57.0
Match: 1j31A
Description: Crystal Structure of Hypothetical Protein PH0642 from Pyrococcus horikoshii
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 1.64442398754697 bayes_pls_golite062009
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds 1.35962310800332 bayes_pls_golite062009
N-carbamoylputrescine amidase activity 0.749539597459006 bayes_pls_golite062009
hydrolase activity 0.06604196264626 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle