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View Structure Prediction Details

Protein: gi|15239997, gi|...
Organism: Arabidopsis thaliana
Length: 463 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15239997, gi|....

Description E-value Query
Range
Subject
Range
POT1B_ARATH - Protection of telomeres protein 1b OS=Arabidopsis thaliana GN=POT1B PE=1 SV=1
540.0 [0..1] [463..1]

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Predicted Domain #1
Region A:
Residues: [1-463]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEERRDDYK FLRIQDAFKA LHLHVNLIGV IVELGFSNGS DCSCTLKIVD PWYSGSGLPV  60
   61 KFVARTIRDL PRVESIGDII LLSRVKIVLI NRKITALCNE TTSSSFALFN GKHSVDSIPY 120
  121 QSSPKFLMRE QDKNFLSNLR EWMITYKFED GSCCFTSLKD IKEGECSNLS CQIVHISKVY 180
  181 KDRWYLFVWD GTEMPPCNIL VKSERLPLCV EPEMLPTYML RKFPTFGSVL RIIVDRVSEK 240
  241 QAIHCLQPGQ HVKLLNLFFQ VNMGLWNATF TPSTKMQYTM SREMEAFSPQ RFLLTPFLIL 300
  301 MCGEKFSPRW NPIARCISRS HSEITGVAHD DAPFVSLMDI LTYHNVTAKF RCVVRFIQVY 360
  361 PRDVRKLRDI NGNIKLVAIL EDATARIHAS LYADEGEKFF GCDESDEEAL VKKLNRLLGG 420
  421 EEMEKVPRNP PWVQCCLFSF YKHKMDQWES RRFRIFDTWI NAS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 78.39794
Match: 1jb7A
Description: Telomere end binding protein alpha subunit
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.141433535514844 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle