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View Structure Prediction Details

Protein: gi|22135900, gi|...
Organism: Arabidopsis thaliana
Length: 517 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|22135900, gi|....

Description E-value Query
Range
Subject
Range
gi|34907610, gi|... - gi|34907610|ref|NP_915152.1| P0696G06.23 [Oryza sativa (japonica cultivar-group)], dbj|BAC06881.1| P...
197.0 [0..1] [514..1]

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Predicted Domain #1
Region A:
Residues: [1-153]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKKGSWFSA IKRVFTPHSK EKQLSNNNQE PEIKSENKEK KKKGFGKKLR NGETNSFLPI  60
   61 FRQPSSIEKI LSEAEREHNL VFRPPTPTDR ANSSSTSVAS PLVRPASPKV PSQRYVSSPK 120
  121 PISPRVAYPQ VHYPKPPSPK PPSPRAVSPR IVQ

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.8
Match: 2j63A
Description: No description for 2j63A was found.

Predicted Domain #2
Region A:
Residues: [154-402]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RREFVHRPEP SLLVKNAYAI KIQAAFRGYM ARRSFRALKG LVRLQGVVRG HSVKRQTMNA  60
   61 MKYMQLLVRV QTQVQSRRIQ MLENRARNDK DDTKLVSSRM SDDWDDSVLT KEEKDVRLHR 120
  121 KIDAMIKRER SMAYAYSHQL WKNSPKSAQD IRTSGFPLWW NWVDRQKNQN QPFRLTPTRP 180
  181 SLSPQPQSSN QNHFRLNNSF DTSTPNSSKS TFVTPSRPIH TPQPYSSSVS RYSRGGGRAT 240
  241 QDSPFKDDD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 33.154902
Match: 2dfsA
Description: No description for 2dfsA was found.

Predicted Domain #3
Region A:
Residues: [403-517]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SLTSCPPFSA PSYMAPTVSA KAKLRANSNP KERMDRTPVS TNEKRRSSFP LGSFKWNKGS  60
   61 LFMSNNSNNK GPGSSSSGAV VLEKHKTLKS VGNLSIDSTV SMPATIGRRA FNRFA

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle