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View Structure Prediction Details

Protein: MAM1_ARATH
Organism: Arabidopsis thaliana
Length: 506 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MAM1_ARATH.

Description E-value Query
Range
Subject
Range
gi|38567380, gi|... - gi|98985838|emb|CAJ55504.1| methylthioalkylmalate synthase 1 [Arabidopsis thaliana], gi|38567380|emb...
565.0 [0..1] [506..1]

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Predicted Domain #1
Region A:
Residues: [1-506]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSLLTSSV MIPTTGSTVV GRSVLPFQSS LHSLRLTHSY KNPALFISCC SSVSKNAATS  60
   61 STDLKPVVER WPEYIPNKLP DGNYVRVFDT TLRDGEQSPG GSLTPPQKLE IARQLAKLRV 120
  121 DIMEVGFPGS SEEELETIKT IAKTVGNEVD EETGYVPVIC AIARCKHRDI EATWEALKYA 180
  181 KRPRILVFTS TSDIHMKYKL KKTQEEVIEM AVSSIRFAKS LGFNDIQFGC EDGGRSDKDF 240
  241 LCKILGEAIK AGVTVVTIGD TVGINMPHEY GELVTYLKAN TPGIDDVVVA VHCHNDLGLA 300
  301 TANSIAGIRA GARQVEVTIN GIGERSGNAS LEEVVMALKC RGAYVINGVY TKIDTRQIMA 360
  361 TSKMVQEYTG LYVQAHKPIV GANCFVHESG IHQDGILKNR STYEILSPED IGIVKSQNSG 420
  421 LVLGKLSGRH AVKDRLKELG YELDDEKLNA VFSLFRDLTK NKKRITDADL KALVTSSDEI 480
  481 SLEKLNGANG LKSNGYIPVP QVSSNV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 102.0
Match: 1sr9A
Description: Crystal Structure of LeuA from Mycobacterium tuberculosis
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 2.67031204377352 bayes_pls_golite062009
porphobilinogen synthase activity 1.24455949903754 bayes_pls_golite062009
binding 1.1388634428163 bayes_pls_golite062009
lyase activity 0.740424046054758 bayes_pls_golite062009
transferase activity, transferring aldehyde or ketonic groups 0.487442544994915 bayes_pls_golite062009
transferase activity 0.464721888799972 bayes_pls_golite062009
transaldolase activity 0.184100272651834 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle