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View Structure Prediction Details

Protein: DTX50_ARATH
Organism: Arabidopsis thaliana
Length: 505 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DTX50_ARATH.

Description E-value Query
Range
Subject
Range
gi|113548993, gi... - gi|115453843|ref|NP_001050522.1| Os03g0571900 [Oryza sativa (japonica cultivar-group)], gi|113548993...
324.0 [0..18] [494..628]

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Predicted Domain #1
Region A:
Residues: [1-250]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQSNRVRDE VTLPLLQKTS HLKNHSSVLS VFLNEAISIC KISYPLVLTG LFLYVRSFVS  60
   61 LSFLGGLGDA TLAGGSLAAA FANITGYSLF SGLTMGVESI CSQAFGARRY NYVCASVKRG 120
  121 IILLLVTSLP VTLLWMNMEK ILLILKQDKK LASEAHIFLL YSVPDLVAQS FLHPLRVYLR 180
  181 TQSKTLPLSI CTVIASFLHL PITFFLVSYL GLGIKGIALS GVVSNFNLVA FLFLYICFFE 240
  241 DKLSVNEDEK 

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 32.853872
Match: PF01554.9
Description: No description for PF01554.9 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [251-505]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ITEETCEDSV REWKKLLCLA IPSCISVCLE WWCYEIMILL CGFLLDPKAS VASMGILIQI  60
   61 TSLVYIFPHS LSLGVSTRVG NELGSNQPKR ARRAAIVGLG LSIALGFTAF AFTVSVRNTW 120
  121 AMFFTDDKEI MKLTAMALPI VGLCELGNCP QTTGCGVLRG SARPKIGANI NGVAFYAVGI 180
  181 PVGAVLAFWF GFGFKGLWLG MLAAQITCVI GMMAATCRTD WELEAERAKV LTTAVDCGSS 240
  241 DDDAKEDMEA GMVDK

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 43.638272
Match: PF01554.9
Description: No description for PF01554.9 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle