| Protein: | CHUP1_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 1004 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CHUP1_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
319.0 | [0..4] | [1001..726] |
|
|
319.0 | [0..4] | [1003..1717] |
|
|
310.0 | [0..4] | [1003..727] |
|
|
308.0 | [0..4] | [1003..617] |
|
|
308.0 | [0..4] | [1003..732] |
|
Region A: Residues: [1-381] |
1 11 21 31 41 51
| | | | | |
1 MFVRIGFVVA ASIAAVTVKR LNVKPSKPSK PSDNGEGGDK EQSVDPDYNL NDKNLQEEEE 60
61 EEEEEVKLIN SVINQTRGSF SDYLDDDILP EFEDLLSGEI EYPLPDDDNN LEKAEKERKY 120
121 EVEMAYNDGE LERLKQLVKE LEEREVKLEG ELLEYYGLKE QESDIVELQR QLKIKTVEID 180
181 MLNITINSLQ AERKKLQEEL SQNGIVRKEL EVARNKIKEL QRQIQLDANQ TKGQLLLLKQ 240
241 HVSSLQMKEE EAMNKDTEVE RKLKAVQDLE VQVMELKRKN RELQHEKREL SIKLDSAEAR 300
301 IATLSNMTES DKVAKVREEV NNLKHNNEDL LKQVEGLQMN RFSEVEELVY LRWVNACLRY 360
361 ELRNYQTPAG KISARDLSKN L
|
| Detection Method: |  |
| Confidence: | 19.39794 |
| Match: | 1i84S |
| Description: | Heavy meromyosin subfragment |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [382-494] |
1 11 21 31 41 51
| | | | | |
1 SPKSQAKAKR LMLEYAGSER GQGDTDLESN YSQPSSPGSD DFDNASMDSS TSRFSSFSKK 60
61 PGLIQKLKKW GKSKDDSSVQ SSPSRSFYGG SPGRLSSSMN KQRGPLESLM IRN
|
| Detection Method: | |
| Confidence: | 7.69897 |
| Match: | 2tmaA |
| Description: | Tropomyosin |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [495-680] |
1 11 21 31 41 51
| | | | | |
1 AGESVAITTF GQVDQESPGT PETPNLPRIR TQQQASSPGE GLNSVAASFH VMSKSVDNVL 60
61 DEKYPAYKDR HKLAVEREKH IKHKADQARA ERFGGNVALP PKLAQLKEKR VVVPSVITAT 120
121 GDQSNESNES NEGKASENAA TVTKMKLVDI EKRPPRVPRP PPRSAGGGKS TNLPSARPPL 180
181 PGGGPP
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [681-1004] |
1 11 21 31 41 51
| | | | | |
1 PPPPPPGGGP PPPPGGGPPP PPPPPGALGR GAGGGNKVHR APELVEFYQS LMKRESKKEG 60
61 APSLISSGTG NSSAARNNMI GEIENRSTFL LAVKADVETQ GDFVQSLATE VRASSFTDIE 120
121 DLLAFVSWLD EELSFLVDER AVLKHFDWPE GKADALREAA FEYQDLMKLE KQVTSFVDDP 180
181 NLSCEPALKK MYKLLEKVEQ SVYALLRTRD MAISRYKEFG IPVDWLSDTG VVGKIKLSSV 240
241 QLAKKYMKRV AYELDSVSGS DKDPNREFLL LQGVRFAFRV HQFAGGFDAE SMKAFEELRS 300
301 RAKTESGDNN NNNNNNSNEE ESVN
|
| Detection Method: | |
| Confidence: | 5.39794 |
| Match: | 2i1jA |
| Description: | No description for 2i1jA was found. |
