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View Structure Prediction Details

Protein: HMT3_ARATH
Organism: Arabidopsis thaliana
Length: 347 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HMT3_ARATH.

Description E-value Query
Range
Subject
Range
gi|21593147 - gi|21593147|gb|AAM65096.1| putative selenocysteine methyltransferase [Arabidopsis thaliana]
472.0 [0..1] [347..1]

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Predicted Domain #1
Region A:
Residues: [1-347]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSFVKEETS SLMTDFLEKC GGYAVVDGGF ATELQRHGAD INDPLWSAKC LITSPHLVTK  60
   61 VHLDYLESGA NIIITASYQA TIQGFVAKGL SVGEAENLLR RSVEITYEAR EIFYNRCTKG 120
  121 SWDFAYAGKA SRRPILVAAS VGSYGAYLAD GSEYSGIYGD SVSKETLKDF HRRRVQILAK 180
  181 SGADLIAFET IPNKLEAEAY ADLLEEEDID IPAWFSFTSK DGVSVPRGDS VVECAKVADS 240
  241 CKNVVAIGIN CTAPRYIHAL IISLRQMTRK PIVVYPNSGE VYDGLNKKWI KSEGESEEDF 300
  301 VSYVSKWRDA GASLFGGCCR TTPNTIRAIA KVLSDEPSAA SKPKFGQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 76.522879
Match: 1q7mA
Description: Cobalamin-dependent methionine synthase (MetH) from Thermotoga maritima (Oxidized, Monoclinic)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
S-methyltransferase activity 3.53817178180686 bayes_pls_golite062009
homocysteine S-methyltransferase activity 2.53321380120921 bayes_pls_golite062009
catalytic activity 1.41033217274476 bayes_pls_golite062009
transferase activity 0.499011632852061 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle