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View Structure Prediction Details

Protein: ATL23_ARATH
Organism: Arabidopsis thaliana
Length: 163 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ATL23_ARATH.

Description E-value Query
Range
Subject
Range
gi|21593762 - gi|21593762|gb|AAM65729.1| unknown [Arabidopsis thaliana]
139.0 [0..1] [163..1]

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Predicted Domain #1
Region A:
Residues: [1-76]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHYTRISPAL VPSLSPTAAA ESSGGGTMIA TVFMALLLPC VGMCIVFLIY LFLLWCSTRR  60
   61 RIERLRFAEP VKPVTG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [77-163]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KGLSVLELEK IPKLTGRELA VIARSTECAV CLEDIESGQS TRLVPGCNHG FHQLCADTWL  60
   61 SNHTVCPVCR AELAPNLPQC NENQSPC

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 12.0
Match: 1iymA
Description: EL5 RING-H2 domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.0938889867773109 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle