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View Structure Prediction Details

Protein: TIC40_ARATH
Organism: Arabidopsis thaliana
Length: 447 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TIC40_ARATH.

Description E-value Query
Range
Subject
Range
gi|70876557 - gi|70876557|gb|EAN89996.1| hypothetical protein, conserved [Trypanosoma cruzi]
gi|71421620 - gi|71421620|ref|XP_811847.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
171.0 [0..3] [363..135]

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Predicted Domain #1
Region A:
Residues: [1-196]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENLTLVSCS ASSPKLLIGC NFTSSLKNPT GFSRRTPNIV LRCSKISASA QSQSPSSRPE  60
   61 NTGEIVVVKQ RSKAFASIFS SSRDQQTTSV ASPSVPVPPP SSSTIGSPLF WIGVGVGLSA 120
  121 LFSYVTSNLK KYAMQTAMKT MMNQMNTQNS QFNNSGFPSG SPFPFPFPPQ TSPASSPFQS 180
  181 QSQSSGATVD VTATKV

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [197-447]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ETPPSTKPKP TPAKDIEVDK PSVVLEASKE KKEEKNYAFE DISPEETTKE SPFSNYAEVS  60
   61 ETNSPKETRL FEDVLQNGAG PANGATASEV FQSLGGGKGG PGLSVEALEK MMEDPTVQKM 120
  121 VYPYLPEEMR NPETFKWMLK NPQYRQQLQD MLNNMSGSGE WDKRMTDTLK NFDLNSPEVK 180
  181 QQFNQIGLTP EEVISKIMEN PDVAMAFQNP RVQAALMECS ENPMNIMKYQ NDKEVMDVFN 240
  241 KISQLFPGMT G

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.24
Match: 1kt0A
Description: FKBP51, C-terminal domain; FKBP51, N-terminal domains
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle