YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: TCX5_ARATH
Organism: Arabidopsis thaliana
Length: 603 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TCX5_ARATH.

Description E-value Query
Range
Subject
Range
TCX6_ARATH - Protein tesmin/TSO1-like CXC 6 OS=Arabidopsis thaliana GN=TCX6 PE=1 SV=1
531.0 [0..1] [602..1]

Back

Predicted Domain #1
Region A:
Residues: [1-133]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGEDGGGGEF PPKKDGVEEG FPTKKPARQL DFTGGSDEHS LSKPAAPTVV ATSVKPIISS  60
   61 SVPSTIRPGM TIAIGQVTQV RPTLPMATTM SNPPSQSQIV NAPIRHPIPE SPKARGPRPN 120
  121 VEGRDGTPQK KKQ

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [134-365]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CNCKHSRCLK LYCECFASGT YCDGCNCVNC FNNVDNEPAR REAVEATLER NPFAFRPKIA  60
   61 SSPHGGRDKR EDIGEVVLLG KHNKGCHCKK SGCLKKYCEC FQANILCSEN CKCLDCKNFE 120
  121 GSEERQALFH GEHSNHMAYL QQAANAAITG AVGSSGFAPS PAPKRRKGQE ILFNQAIKDS 180
  181 SRLSHFPQVN NGRTGGPTSG TSPSPVSRAG GNASSVPSKF VYRSLLADII QP

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [366-603]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HDVRALCSVL VTVAGEAAKT STDKRNEIEN RVDDQTETSL ASSAQDQPQG NNNAADVEMV  60
   61 ATDHNQADKS GPEESNSDGV DASKVTPLSP ATLALMCDEQ DTIFMVAAPS PNGSVDPNGC 120
  121 RPNSQGQSEI YAEQERLVLT KFRDCLNRLI SYAEIKESKC LSLARMHIQP PAIATVKTEN 180
  181 GIQQQVPIVN GASRTNCQPT LNKPQPMQLM NTTSAAPATA TNTQHLQKPP ALSEKKDP

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle