YRC Public Data Repository - Protein Structure Prediction

Protein:	VDE_ARATH
Organism:	Arabidopsis thaliana
Length:	462 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VDE_ARATH.

Description	E-value	Query Range	Subject Range
VDE_SPIOL - Violaxanthin de-epoxidase, chloroplastic OS=Spinacia oleracea GN=VDE1 PE=1 SV=2	680.0	[0..80]	[462..94]
gi\|113564163, gi... - gi\|115457984\|ref\|NP_001052592.1\| Os04g0379700 [Oryza sativa (japonica cultivar-group)], gi\|113564163...	669.0	[0..81]	[462..88]
gi\|81302478 - gi\|81302478\|gb\|ABB70816.1\| violaxanthin de-epoxidase [Coffea arabica]	664.0	[0..85]	[462..108]
gi\|81296554 - gi\|81296554\|gb\|ABB70514.1\| violaxanthin de-epoxidase [Coffea canephora]	664.0	[0..85]	[462..108]
gi\|17438153 - gi\|17438153\|gb\|AAF97601.3\| violaxanthin de-epoxidase precursor [Oryza sativa subsp. indica]	662.0	[0..81]	[462..66]
gi\|87299443 - gi\|87299443\|dbj\|BAE79554.1\| violaxanthin deepoxidase [Chrysanthemum x morifolium]	656.0	[0..78]	[462..102]
gi\|19113671 - gi\|19113671\|gb\|AAL67858.2\|AF462269_1 violaxanthin de-epoxidase [Camellia sinensis]	655.0	[0..69]	[462..92]
gi\|13676584 - gi\|13676584\|gb\|AAK38177.1\|AF265294_1 violaxanthin de-epoxidase [Triticum aestivum]	649.0	[0..84]	[462..77]

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Predicted Domain #1

Region A:
Residues: [1-80]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVATHCFTS PCHDRIRFFS SDDGIGRLGI TRKRINGTFL LKILPPIQSA DLRTTGGRSS  60
   61 RPLSAFRSGF SKGIFDIVPL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [81-128]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PSKNELKELT APLLLKLVGV LACAFLIVPS ADAVDALKTC ACLLKGCR

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [129-363]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IELAKCIANP ACAANVACLQ TCNNRPDETE CQIKCGDLFE NSVVDEFNEC AVSRKKCVPR  60
   61 KSDLGEFPAP DPSVLVQNFN ISDFNGKWYI TSGLNPTFDA FDCQLHEFHT EGDNKLVGNI 120
  121 SWRIKTLDSG FFTRSAVQKF VQDPNQPGVL YNHDNEYLHY QDDWYILSSK IENKPEDYIF 180
  181 VYYRGRNDAW DGYGGAVVYT RSSVLPNSII PELEKAAKSI GRDFSTFIRT DNTCG

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.47
Match:	2hzqA
Description:	No description for 2hzqA was found.

Predicted Domain #4

Region A:
Residues: [364-462]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PEPALVERIE KTVEEGERII VKEVEEIEEE VEKEVEKVGR TEMTLFQRLA EGFNELKQDE  60
   61 ENFVRELSKE EMEFLDEIKM EASEVEKLFG KALPIRKVR

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.814	a.118.8	TPR-like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits