YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|15235706, gi|...
Organism: Arabidopsis thaliana
Length: 219 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15235706, gi|....

Description E-value Query
Range
Subject
Range
gi|30681959, gi|... - gi|30681959|ref|NP_850563.1| universal stress protein (USP) family protein [Arabidopsis thaliana], g...
136.0 [0..1] [201..15]

Back

Predicted Domain #1
Region A:
Residues: [1-219]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEGRRGSSS TPQSRKIMVI ADPTRESAAA LQYALSHAVL EQDELILVHI ENSGGSWKNA  60
   61 FSSFLRLPSS ISSSSSGSSP ASNGTTTASN AAANALASEI GQGDGNFLEQ MKRICEIAQP 120
  121 KVRVHTECIA IDGVKATAIL LHGDKLGVDV IIIGQRRTIS SSLLGTRRPG GSLRGSKGVD 180
  181 TAEYLIENSK CTCVGVTKKG QNGGYVLNTK THKNFWLLA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 23.221849
Match: 1mjhA
Description: "Hypothetical" protein MJ0577
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.298809327772818 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle