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View Structure Prediction Details

Protein: PMI1_ARATH
Organism: Arabidopsis thaliana
Length: 843 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PMI1_ARATH.

Description E-value Query
Range
Subject
Range
gi|115480581, gi... - gi|215704577|dbj|BAG94210.1| unnamed protein product [Oryza sativa Japonica Group], gi|115480581|ref...
907.0 [0..11] [842..7]
gi|18252231, gi|... - gi|34365709|gb|AAQ65166.1| At1g42550 [Arabidopsis thaliana], gi|22329991|ref|NP_174979.2| PMI1 (PLAS...
890.0 [0..136] [843..1]

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Predicted Domain #1
Region A:
Residues: [1-120]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGEYSGSRS SNTQLLAELE ALSENLYQKP QVSVGNRRTN SLALPRSSVP SLVTSADEVS  60
   61 TARAEDLTVS KPRARRLSLS PWRSRPKLEV EEEENVTQSN RIVKKPEESS SGSGVKEEKK 120
  121 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [121-306]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GIWNWKPIRG LVRIGMQKLS CLLSVEVVAA QNLPASMNGL RLGVCVRKKE TKDGAVQTMP  60
   61 CRVSQGSADF EETLFIKCHV YYSPANGKGS PAKFEARPFL FYLFAVDAKE LEFGRHVVDL 120
  121 SELIQESVEK MNYEGARVRQ WDMNWGLSGK AKGGELALKL GFQIMEKDGG AGIYSKQGEF 180
  181 GMKPSS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [307-520]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KPKNFANSFG RKQSKTSFSV PSPKMTSRSE AWTPASGVES VSDFHGMEHL NLDEPEEKPE  60
   61 EKPVQKNDKP EQRAEDDQEE PDFEVVDKGV EFDDDLETEK SDGTIGERSV EMKEQHVNVD 120
  121 DPRHIMRLTE LDSIAKQIKA LESMMKDESD GGDGETESQR LDEEEQTVTK EFLQLLEDEE 180
  181 TEKLKFYQHK MDISELRSGE SVDDESENYL SDLG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [521-690]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KGIGCVVQTR DGGYLVSMNP FDTVVMRKDT PKLVMQISKQ IVVLPEAGPA TGFELFHRMA  60
   61 GSGEELESKI SSLMAIDELM GKTGEQVAFE GIASAIIQGR NKERANTSAA RTVAAVKTMA 120
  121 NAMSSGRRER IMTGIWNVEE NPLTSAEEVL AVSLQKLEEM VVEGLKIQAD 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [691-843]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVDDEAPFEV SAAKGQKNPL ESTIPLEEWQ KEHRTQQKLT VLATVQLRDP TRRYEAVGGT  60
   61 VVVAVQAEEE EEKGLKVGSL HIGGVKKDAA EKRRLTAAQW LVEHGMGKKG KKKSNIKKKE 120
  121 KEEEEEEMLW SLSSRVMADM WLKSIRNPDV KLH

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


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Created and Maintained by: Michael Riffle