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View Structure Prediction Details

Protein: MIF1_ARATH
Organism: Arabidopsis thaliana
Length: 102 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MIF1_ARATH.

Description E-value Query
Range
Subject
Range
gi|21553465 - gi|21553465|gb|AAM62558.1| unknown [Arabidopsis thaliana]
135.0 [0..2] [102..1]
ZHD2_ORYSJ - Zinc-finger homeodomain protein 2 OS=Oryza sativa subsp. japonica GN=ZHD2 PE=2 SV=1
ZHD2_ORYSI - Zinc-finger homeodomain protein 2 OS=Oryza sativa subsp. indica GN=ZHD2 PE=3 SV=1
121.0 [0..38] [102..62]

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Predicted Domain #1
Region A:
Residues: [1-102]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMKKRQMVIK QRSRNSNTSS SWTTTSSSSS SSEISNVRYV ECQKNHAANI GGYAVDGCRE  60
   61 FMAAGVEGTV DALRCAACGC HRNFHRKEVD TEVVCEYSPP NA

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 38.657577
Match: PF04770.3
Description: No description for PF04770.3 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.455 N/A N/A a.58.1 Chemotaxis receptor methyltransferase CheR, N-terminal domain
View Download 0.409 N/A N/A d.74.2 C-terminal domain of arginine repressor
View Download 0.363 N/A N/A a.152.1 Antioxidant defence protein AhpD
View Download 0.328 N/A N/A a.39.1 EF-hand
View Download 0.314 N/A N/A d.74.2 C-terminal domain of arginine repressor
View Download 0.304 N/A N/A a.121.1 Tetracyclin repressor-like, C-terminal domain
View Download 0.304 N/A N/A a.121.1 Tetracyclin repressor-like, C-terminal domain
View Download 0.299 N/A N/A a.4.9 Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3
View Download 0.290 N/A N/A a.74.1 Cyclin-like
View Download 0.254 N/A N/A a.240.1 Description not found.
View Download 0.241 N/A N/A d.34.1 DNA-binding domain of Mlu1-box binding protein MBP1
View Download 0.222 N/A N/A d.188.1 Prokaryotic ribosomal protein L17
View Download 0.219 N/A N/A d.74.3 RBP11-like subunits of RNA polymerase


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle