YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|15237955, gi\|...
Organism:	Arabidopsis thaliana
Length:	285 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15237955, gi|....

Description	E-value	Query Range	Subject Range
gi\|6714411, gi\|6... - gi\|67633618\|gb\|AAY78733.1\| universal stress protein family protein [Arabidopsis thaliana], gi\|671441...	179.0	[0..1]	[285..1]
gi\|20905935, gi\|... - gi\|21227554\|ref\|NP_633476.1\| universal stress protein [Methanosarcina mazei Go1], gi\|20905935\|gb\|AAM...	166.0	[0..7]	[263..37]
gi\|55229429, gi\|... - gi\|55376704\|ref\|YP_134555.1\| universal stress protein [Haloarcula marismortui ATCC 43049], gi\|552294...	144.0	[0..2]	[270..24]
gi\|33866511, gi\|... - gi\|33866511\|ref\|NP_898070.1\| hypothetical protein SYNW1979 [Synechococcus sp. WH 8102], gi\|33633289\|...	138.0	[0..7]	[266..29]
gi\|83756959, gi\|... - gi\|83815565\|ref\|YP_446095.1\| universal stress protein [Salinibacter ruber DSM 13855], gi\|83756959\|gb...	137.0	[0..46]	[265..112]
gi\|7483166 - pir\|\|G69469 conserved hypothetical protein AF1760 - Archaeoglobus fulgidus gi\|11499349, gi\|... - gi\|2648791\|gb\|AAB89491.1\| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304], gi\|11499...	136.0	[0..11]	[267..37]
gi\|75910683, gi\|... - gi\|75910683\|ref\|YP_324979.1\| hypothetical protein Ava_4486 [Anabaena variabilis ATCC 29413], gi\|7570...	135.0	[0..7]	[265..52]
gi\|81168392, gi\|... - gi\|81299511\|ref\|YP_399719.1\| hypothetical protein Synpcc7942_0700 [Synechococcus elongatus PCC 7942]...	134.0	[0..7]	[262..58]

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Predicted Domain #1

Region A:
Residues: [1-114]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARSLKKSAK LSLRRVRINS PSIRFKPDSS SIERDQRIEF LGENGDDAGS GEEDTKEANN  60
   61 ESEEVEDKEE ERVKVIVEEE EEKEQDDAKS FNIGGGEGKK EAVAAVEAVE EEAE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.269	c.136.1	Description not found.
View	Download	0.234	a.24.18	Description not found.
View	Download	0.230	c.2.1	NAD(P)-binding Rossmann-fold domains
View	Download	0.212	a.39.2	Insect pheromon/odorant-binding proteins
View	Download	0.212	a.39.2	Insect pheromon/odorant-binding proteins

Predicted Domain #2

Region A:
Residues: [115-285]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GGNRVMVVVD KALASTGALE WAITHTLQPQ DTLFLLYFAK PFRKSKRKNR KREVKTDELV  60
   61 HTLKKLCQTK RPGIEVEIRR LEGKDKDKGQ KIVEESKKQQ VSLLVVGQEK KPPVWRLLKR 120
  121 WAWKRRRGHE GVLKYCLENA SCMTIAVKPK NRKLGGYLIT TKRHKNFWLL A

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.0
Match:	2pfsA
Description:	No description for 2pfsA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits