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View Structure Prediction Details

Protein: gi|11357777, gi|...
Organism: Arabidopsis thaliana
Length: 415 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|11357777, gi|....

Description E-value Query
Range
Subject
Range
gi|186464325, gi... - gi|23128981|ref|ZP_00110817.1| COG2319: FOG: WD40 repeat [Nostoc punctiforme PCC 73102], gi|18668187...
432.0 [0..2] [413..1285]

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Predicted Domain #1
Region A:
Residues: [1-336]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVRSIQEGVL MSSSSSSTTS NSNDSDGSLS PSASTKSFVL NTLRPPITGA YKPLAVLSAH  60
   61 VGSVSSLALC GEFLLSASQG KDIIVWQQPD LKIFAKFGQG DGSVKALVSV GSKVFTAHQD 120
  121 SRIRVWKVSR RNSENAFRLV DTLPTTKDYL GKFMKQSNYV QTRRNHKRLW IEHADSISCL 180
  181 AVHAGIIYSG SWDKTLKVWR LSDLKCLESI KAHDDAINGL VAGDGRVYSA SADGKVKIWG 240
  241 KEKRKQIEST SSSSSSLHVL KATLEGRAEV SVNSVVVSGD GNWVYGGGSD GFVIGWEKKE 300
  301 KEGDFEEWRL GFETRGHNMA VLCMCVVGEM VCSGSA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 71.69897
Match: 2ovpB
Description: No description for 2ovpB was found.

Predicted Domain #2
Region A:
Residues: [337-415]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DKSIGLWRRE VTGMLCKFGV IHGHEGPVKC LQASPNNVGA GFMLYSGGLD KSLRVWWVPK  60
   61 QDNLEEKKSS FKTLLTQKE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 49.09691
Match: 1erjA
Description: Tup1, C-terminal domain
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle