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View Structure Prediction Details

Protein: gi|32189307, gi|...
Organism: Arabidopsis thaliana
Length: 244 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|32189307, gi|....

Description E-value Query
Range
Subject
Range
gi|21536491 - gi|21536491|gb|AAM60823.1| unknown [Arabidopsis thaliana]
395.0 [0..1] [244..1]
gi|20093930, gi|... - gi|20093930|ref|NP_613777.1| fused ProFAR isomerase-like protein/uncharacterized protein [Methanopyr...
161.0 [0..107] [210..237]
gi|7518597, gi|1... - pir||H71142 hypothetical protein PH0355 - Pyrococcus horikoshii, gi|160286347|pdb|2Z0T|D Chain D, C...
gi|14590265, gi|... - gi|3256746|dbj|BAA29429.1| 109aa long hypothetical protein [Pyrococcus horikoshii OT3], gi|14590265|...
157.0 [0..105] [210..1]
gi|5459005, gi|7... - pir||E75006 hypothetical protein PAB1310 - Pyrococcus abyssi (strain Orsay), gi|5459005|emb|CAB50491...
gi|14521785, gi|... - gi|5459005|emb|CAB50491.1| Hypothetical protein [Pyrococcus abyssi GE5], gi|14521785|ref|NP_127261.1...
157.0 [0..107] [209..4]
gi|58176694 - gi|58176694|pdb|1S04|A Chain A, Solution Structure Of The Hypothetical Protein Pf0455 From Pyrococcu...
gi|18892426, gi|... - gi|18976827|ref|NP_578184.1| hypothetical protein PF0455 [Pyrococcus furiosus DSM 3638], gi|18892426...
151.0 [0..105] [211..1]
gi|57160096, gi|... - gi|57641772|ref|YP_184250.1| hypothetical protein TK1837 [Thermococcus kodakarensis KOD1], gi|571600...
151.0 [0..106] [212..3]

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Predicted Domain #1
Region A:
Residues: [1-103]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEQPMSPGTK SVDLRECMES LLRFSLRSHL NESVPSFDLD LTRDFCLHLL GEATDSTEKS  60
   61 AVYKLLATAL SECLASEGDK NSNLEKYSKL IHGLGYDLIN MLK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.935 a.118.19 Description not found.

Predicted Domain #2
Region A:
Residues: [104-244]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EVNFELHVQE PYFTQLKDGL KTVEGRCAVG DYMRISSGDF LLFNKCLLLE VQDVHRYTSF  60
   61 SEMLKVEGLA KVLPGVESIE EGVQVYRNFY SEEKERMNGV VAIRVAKPAN QPSAALAGVL 120
  121 SELKSSGIKS LLDEYTAGVT S

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 37.0
Match: 1s04A
Description: Solution Structure Of The Hypothetical Protein PF0455 From Pyrococcus furiosus: Northeast Structural Genomics Consortium Target PfR13
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle