YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: lir-1
Organism: Caenorhabditis elegans
Length: 300 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for lir-1.

Description E-value Query
Range
Subject
Range
gi|73947291 - gi|73947291|ref|XP_541354.2| PREDICTED: similar to Zinc finger protein 606 (Zinc finger protein 328)...
436.0 [0..19] [300..2574]

Back

Predicted Domain #1
Region A:
Residues: [1-300]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPKFVVIELN DDAATIDLLS YCVKKNFERV SLLTRLEDHP YLRDDQDVVQ DDTQSQGTDG  60
   61 MLLQLNDEER QRLMKMISTP GPQTLSMERI QMAPGQGQHI LQQHQIPSTS SYTNNSFIYI 120
  121 KSDPQYKDEP QQQSNQFDAT VNSVAHGQAG LSTLEMFACN GSPNGGDVLR RKTPSRKAED 180
  181 SIKATCKVCG HDVMYSPQRT WNLMRHVWIM HQSSKPNQCS ICGYSHIKPY VRKHIESQHK 240
  241 HDSNATIIDL KSPELEAEWS QLLDQCFGVT YRKWKHHKED TQHTGGLLFD DDELRGLCSG 300
  301 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 56.69897
Match: 2i13A
Description: No description for 2i13A was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle