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View Structure Prediction Details

Protein: CE36875
Organism: Caenorhabditis elegans
Length: 232 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE36875.

Description E-value Query
Range
Subject
Range
gi|542179953|ref... - PREDICTED: potassium voltage-gated channel subfamily A member 2 isoform X3 [Zonotrichia albicollis],...
gi|45383239, gi|... - gi|45383239|ref|NP_989794.1| potassium voltage-gated channel, shaker-related subfamily, member 2 [Ga...
153.0 [0..2] [227..35]

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Predicted Domain #1
Region A:
Residues: [1-232]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIRLDVGGRK FSTNRSTLTK FDGYFRKLPK LKDESSTTTR IVIDRSPKHF ETVLNFMRDG  60
   61 SVDLPESLKH LRQLLREAIF YGLEKLIECC KQAMATSEIV AVAPEEPKSP DTVVPLLSDY 120
  121 QVNNNDLQHM VRICGDILRK LGNHNILSLP SVYTFDDYVN YLKSVTSAII PAVYARISNW 180
  181 RHYFKKSDEA HSCVQKIIQW IYAMFAGFNR LPAAVHWELA LLLCVLMVFQ TC

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 36.69897
Match: 2a79B
Description: Mammalian Shaker Kv1.2 potassium channel- beta subunit complex
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle