| Protein: | lpd-6 |
| Organism: | Caenorhabditis elegans |
| Length: | 573 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for lpd-6.
| Description | E-value | Query Range |
Subject Range |
|
|
495.0 | [0..32] | [461..6] |
|
Region A: Residues: [1-329] |
1 11 21 31 41 51
| | | | | |
1 MKMKKGKKQR KSGAHNRGNV DALSQKDALY HQEKFVKKLQ KQKFLENKEI ELARQPHCLV 60
61 IHRGDVGKYV KGLESDLRNL VEPNTAKNLK ILKRNNIKDF IVNGAVLGVT NMMVLTSSDA 120
121 SLQLRMMRFS QGPTLSFKVK QYSLARHVVN CQKRPVATDK LFKSSPLVVM NGFGDGTQKH 180
181 LSLVQTFIQN MFPSINVDTI QLGNLKRCLI VSYDEETDEI QMRHFAIRVV ASGLNKSVKK 240
241 LMQAEKTMGK NIPNLSTYKD ISDYFLNPGQ LSDSEFEGDQ QEVELPQDIS EGRGCGVGQK 300
301 SNVRLHEIGP RLTLELVKIE EGIDEGEVL
|
| Detection Method: |  |
| Confidence: | 4.18 |
| Match: | 2cxhA |
| Description: | Crystal structure of probable ribosomal biogenesis protein from Aeropyrum pernix K1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| catalytic activity | 0.323890296968392 | bayes_pls_golite062009 |
|
Region A: Residues: [330-573] |
1 11 21 31 41 51
| | | | | |
1 YHKHNAKTPD ELIKLRAHMD KKKQMKKRRE QESEQRVIRR LTIVKEQQDA EEAEVKAIRE 60
61 NAARKQAAAT GQVEEVENQK EKDREIAMNR ERDLKRANEE WGTSEASKRP RYEDSRGGFR 120
121 GGFRGRGEDR GGFRGRGGDR GGFRGRDRDG GGFRGRSVDR GGFRGGGGDR GGFRGRSSDR 180
181 GGDRGGFRGR SGDRDGGFRG GFGGRGGGGF RGGDRGGFRG RGGGGGFRGG RGGDRGGGFR 240
241 GGRR
|
| Detection Method: | |
| Confidence: | 29.0 |
| Match: | 1y0fB |
| Description: | No description for 1y0fB was found. |
