YRC Public Data Repository - Protein Structure Prediction

Protein:	APAG_PSEPK
Organism:	Pseudomonas putida KT2440
Length:	126 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for APAG_PSEPK.

Description	E-value	Query Range	Subject Range
APAG_PSEA7 - Protein ApaG OS=Pseudomonas aeruginosa (strain PA7) GN=apaG PE=3 SV=1	216.0	[0..1]	[126..1]
gi\|107099577 - gi\|107099577\|ref\|ZP_01363495.1\| hypothetical protein PaerPA_01000590 [Pseudomonas aeruginosa PACS2] APAG_PSEA8 - Protein ApaG OS=Pseudomonas aeruginosa (strain LESB58) GN=apaG PE=3 SV=1 APAG_PSEAB - Protein ApaG OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=apaG PE=3 SV=1 APAG_PSEAE - Protein ApaG OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=apaG... gi\|126197063, gi... - gi\|84324206\|ref\|ZP_00972269.1\| COG2967: Uncharacterized protein affecting Mg2+/Co2+ transport [Pseud... APAG_PSEAE - Protein apaG OS=Pseudomonas aeruginosa GN=apaG PE=3 SV=1 gi\|194548180, gi... - gi\|84318868\|ref\|ZP_00967285.1\| COG2967: Uncharacterized protein affecting Mg2+/Co2+ transport [Pseud...	216.0	[0..1]	[126..1]
gi\|49077734 - gi\|49077734\|gb\|AAT49712.1\| PA0591 [synthetic construct]	216.0	[0..1]	[126..1]
gi\|67155362 - gi\|67155362\|ref\|ZP_00416990.1\| Protein of unknown function DUF525 [Azotobacter vinelandii AvOP] gi\|67155362, gi\|... - gi\|67155362\|ref\|ZP_00416990.1\| Protein of unknown function DUF525 [Azotobacter vinelandii AvOP], gi\|...	212.0	[0..1]	[126..16]
APAG_THIDA - Protein ApaG OS=Thiobacillus denitrificans (strain ATCC 25259) GN=apaG PE=3 SV=1	210.0	[0..5]	[126..6]
gi\|83720888, gi\|... - gi\|83720888\|ref\|YP_443413.1\| ApaG [Burkholderia thailandensis E264], gi\|83654713\|gb\|ABC38776.1\| apaG...	208.0	[0..2]	[126..61]
APAG_PSEF5 - Protein ApaG OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=apaG PE=3 SV=1	207.0	[0..1]	[126..1]
APAG_DECAR - Protein ApaG OS=Dechloromonas aromatica (strain RCB) GN=apaG PE=3 SV=1	207.0	[0..1]	[126..1]
APAG_PSEE4 - Protein ApaG OS=Pseudomonas entomophila (strain L48) GN=apaG PE=3 SV=1 gi\|95108687 - gi\|95108687\|emb\|CAK13381.1\| conserved hypothetical protein ApaG [Pseudomonas entomophila L48]	207.0	[0..1]	[126..1]
APAG_MAGSA - Protein ApaG OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=apaG PE=3 SV=1	207.0	[0..2]	[123..3]

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Predicted Domain #1

Region A:
Residues: [1-126]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDPRYQIDV SVVTRYLKEQ SDPENSRFAF AYTITVQNNG SLSAKLLSRH WLITNGDGEV  60
   61 EEVRGAGVVG QQPNIDPGQS HTYSSGAVIS TRVGTMQGSY QMFAEDGKRF DAEIAPFRLA 120
  121 VPGALH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	50.221849
Match:	1xvsA
Description:	Crystal structure of apaG Protein from Vibrio cholerae
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits