YRC Public Data Repository - Protein Structure Prediction

Protein:	APO1B_PAPHA
Organism:	Papio hamadryas
Length:	83 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for APO1B_PAPHA.

Description	E-value	Query Range	Subject Range
APOC1_RAT - Apolipoprotein C-I OS=Rattus norvegicus GN=Apoc1 PE=3 SV=1	120.0	[0..1]	[80..1]
tr\|M0R547\|M0R547_RAT - Protein LOC100910181 OS=Rattus norvegicus GN=LOC100910181 PE=4 SV=1 APOC1_MOUSE - Apolipoprotein C-I OS=Mus musculus GN=Apoc1 PE=1 SV=1	118.0	[0..1]	[80..1]
gi\|68398041 - gi\|68398041\|ref\|XP_699235.1\| PREDICTED: hypothetical protein [Danio rerio]	116.0	[0..1]	[79..38]
gi\|178834 - gi\|178834\|gb\|AAA51762.1\| apolipoprotein CI [Homo sapiens]	107.0	[0..15]	[83..1]
gi\|61370995, gi\|... - gi\|61371003\|gb\|AAX43591.1\| apolipoprotein C-I [synthetic construct], gi\|61370995\|gb\|AAX43590.1\| apol...	106.0	[0..1]	[83..1]
APO1B_PANTR - Apolipoprotein C-I, basic form OS=Pan troglodytes GN=APOC1B PE=1 SV=1	104.0	[0..1]	[83..1]
gi\|47212683 - gi\|47212683\|emb\|CAF95503.1\| unnamed protein product [Tetraodon nigroviridis]	103.0	[0..1]	[79..1]

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Predicted Domain #1

Region A:
Residues: [1-83]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLFLSLPVL VVVLSMVLEG PAPVQGAPDV SSALDKLKEF GNTLEDKAWE VINRIKQSEF  60
   61 PAKTRDWFSE TFRKVKEKLK INS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	18.0
Match:	1iojA
Description:	HUMAN APOLIPOPROTEIN C-I, NMR, 18 STRUCTURES
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits