YRC Public Data Repository - Protein Structure Prediction

Protein:	APOC3_MOUSE
Organism:	Mus musculus
Length:	99 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for APOC3_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|12842337, gi\|... - gi\|15421856\|ref\|NP_075603.1\| apolipoprotein C-III [Mus musculus], gi\|12842337\|dbj\|BAB25563.1\| unname...	150.0	[0..1]	[99..1]
APOC3_MACFA - Apolipoprotein C-III OS=Macaca fascicularis GN=APOC3 PE=1 SV=2	145.0	[0..1]	[99..1]
gi\|109108764 - gi\|109108764\|ref\|XP_001090312.1\| PREDICTED: similar to Apolipoprotein C-III precursor (Apo-CIII) (Ap...	142.0	[0..1]	[99..1]
gi\|91990, gi\|149... - gi\|91990\|pir\|\|B24700 apolipoprotein C-III precursor - rat, gi\|149041554\|gb\|EDL95395.1\| apolipoprotei...	138.0	[0..1]	[98..1]
APOC3_PIG - Apolipoprotein C-III OS=Sus scrofa GN=APOC3 PE=1 SV=2 gi\|423202 - pir\|\|B46018 apolipoprotein C-III - pig	137.0	[0..1]	[96..1]
APOC3_CANLF - Apolipoprotein C-III OS=Canis lupus familiaris GN=APOC3 PE=2 SV=1	136.0	[0..1]	[99..1]
gi\|123982458, gi... - gi\|123997125\|gb\|ABM86164.1\| apolipoprotein C-III [synthetic construct], gi\|123982458\|gb\|ABM82970.1\| ... APOC3 - apolipoprotein C-III	135.0	[0..1]	[99..1]

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Predicted Domain #1

Region A:
Residues: [1-99]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQPRTLLTVA LLALLASARA EEVEGSLLLG SVQGYMEQAS KTVQDALSSV QESDIAVVAR  60
   61 GWMDNHFRFL KGYWSKFTDK FTGFWDSNPE DQPTPAIES

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	0.956
Match:	1l6lA
Description:	Apolipoprotein A-II
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits