YRC Public Data Repository - Protein Structure Prediction

Protein:	ARGE_ECOLI
Organism:	Escherichia coli
Length:	383 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ARGE_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|168761651, gi... - gi\|189367942\|gb\|EDU86358.1\| acetylornithine deacetylase [Escherichia coli O157:H7 str. EC4501], gi\|1... gi\|168755651, gi... - gi\|189357172\|gb\|EDU75591.1\| acetylornithine deacetylase [Escherichia coli O157:H7 str. EC4401], gi\|1... gi\|188016763, gi... - gi\|188016763\|gb\|EDU54885.1\| acetylornithine deacetylase [Escherichia coli O157:H7 str. EC4113], gi\|1... ARGE_ECO57 - Acetylornithine deacetylase OS=Escherichia coli O157:H7 GN=argE PE=3 SV=1 gi\|168786823, gi... - gi\|189373462\|gb\|EDU91878.1\| acetylornithine deacetylase [Escherichia coli O157:H7 str. EC869], gi\|16... gi\|189001523, gi... - gi\|189001523\|gb\|EDU70509.1\| acetylornithine deacetylase [Escherichia coli O157:H7 str. EC4076], gi\|1... gi\|187769163, gi... - gi\|187769163\|gb\|EDU33007.1\| acetylornithine deacetylase [Escherichia coli O157:H7 str. EC4196], gi\|1... gi\|168768269, gi... - gi\|189362568\|gb\|EDU80987.1\| acetylornithine deacetylase [Escherichia coli O157:H7 str. EC4486], gi\|1... gi\|15834140, gi\|... - gi\|15834140\|ref\|NP_312913.1\| acetylornithine deacetylase [Escherichia coli O157:H7 str. Sakai], gi\|1... gi\|15804553, gi\|... - gi\|15804553\|ref\|NP_290594.1\| acetylornithine deacetylase [Escherichia coli O157:H7 EDL933], gi\|12518... gi\|209752024, gi... - pir\|\|F91239 acetylornithine deacetylase [imported] - Escherichia coli (strain O157:H7, substrain RI... gi\|208735017, gi... - gi\|208813740\|ref\|ZP_03255069.1\| acetylornithine deacetylase [Escherichia coli O157:H7 str. EC4045], ... gi\|254595362, gi... - gi\|254795962\|ref\|YP_003080799.1\| acetylornithine deacetylase [Escherichia coli O157:H7 str. TW14359]... gi\|208726836, gi... - gi\|208807035\|ref\|ZP_03249372.1\| acetylornithine deacetylase [Escherichia coli O157:H7 str. EC4206], ... gi\|195937607 - gi\|195937607\|ref\|ZP_03082989.1\| acetylornithine deacetylase [Escherichia coli O157:H7 str. EC4024] gi\|189378021, gi... - gi\|189378021\|gb\|EDU96437.1\| acetylornithine deacetylase [Escherichia coli O157:H7 str. EC508], gi\|16... gi\|217324940, gi... - gi\|217324940\|ref\|ZP_03441024.1\| acetylornithine deacetylase [Escherichia coli O157:H7 str. TW14588],... ARGE_ECO5E - Acetylornithine deacetylase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=argE PE=3 SV=1 gi\|208741046, gi... - gi\|208820923\|ref\|ZP_03261243.1\| acetylornithine deacetylase [Escherichia coli O157:H7 str. EC4042], ...	327.0	[0..1]	[383..1]
ARGE_ECO24 - Acetylornithine deacetylase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=argE PE=3 SV=1	326.0	[0..1]	[383..1]
ARGE_SHIDS - Acetylornithine deacetylase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=argE PE=3 SV=1	326.0	[0..1]	[383..1]
ARGE_ECOSE - Acetylornithine deacetylase OS=Escherichia coli (strain SE11) GN=argE PE=3 SV=1 ARGE_ECO8A - Acetylornithine deacetylase OS=Escherichia coli O8 (strain IAI1) GN=argE PE=3 SV=1 gi\|193068074, gi... - gi\|75238402\|ref\|ZP_00722401.1\| COG0624: Acetylornithine deacetylase/Succinyl-diaminopimelate desucci... gi\|75227103, gi\|... - gi\|75227103\|ref\|ZP_00713921.1\| COG0624: Acetylornithine deacetylase/Succinyl-diaminopimelate desucci...	326.0	[0..1]	[383..1]
gi\|194433198, gi... - gi\|83569775\|ref\|ZP_00921224.1\| COG0624: Acetylornithine deacetylase/Succinyl-diaminopimelate desucci...	326.0	[0..1]	[383..1]
gi\|242379493, gi... - gi\|251787220\|ref\|YP_003001524.1\| hypothetical protein B21_03791 [Escherichia coli BL21], gi\|24237949... gi\|254163907, gi... - gi\|254163907\|ref\|YP_003047015.1\| acetylornithine deacetylase [Escherichia coli B str. REL606], gi\|25... gi\|254290658, gi... - gi\|254290658\|ref\|YP_003056406.1\| acetylornithine deacetylase [Escherichia coli BL21(DE3)], gi\|253979... ARGE_ECOHS - Acetylornithine deacetylase OS=Escherichia coli O9:H4 (strain HS) GN=argE PE=3 SV=1 gi\|83586199, gi\|... - gi\|83586199\|ref\|ZP_00924835.1\| COG0624: Acetylornithine deacetylase/Succinyl-diaminopimelate desucci...	326.0	[0..1]	[383..1]
ARGE_SHIB3 - Acetylornithine deacetylase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=argE PE=3...	325.0	[0..1]	[383..1]
gi\|91213505, gi\|... - gi\|91213505\|ref\|YP_543491.1\| acetylornithine deacetylase [Escherichia coli UTI89], gi\|91075079\|gb\|AB... gi\|237702994, gi... - gi\|237702994\|ref\|ZP_04533475.1\| acetylornithine deacetylase [Escherichia sp. 3_2_53FAA], gi\|22690293... gi\|26111161, gi\|... - gi\|26250730\|ref\|NP_756770.1\| acetylornithine deacetylase [Escherichia coli CFT073], gi\|26111161\|gb\|A... gi\|115515350, gi... - gi\|117626226\|ref\|YP_859549.1\| acetylornithine deacetylase [Escherichia coli APEC O1], gi\|115515350\|g... gi\|227885296, gi... - gi\|227885296\|ref\|ZP_04003101.1\| acetylornithine deacetylase [Escherichia coli 83972], gi\|227837672\|g...	325.0	[0..1]	[383..14]
ARGE_ECOL6 - Acetylornithine deacetylase OS=Escherichia coli O6 GN=argE PE=3 SV=2 ARGE_ECO45 - Acetylornithine deacetylase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=argE PE=3 SV=1 ARGE_ECO81 - Acetylornithine deacetylase OS=Escherichia coli O81 (strain ED1a) GN=argE PE=3 SV=1 ARGE_ECOL6 - Acetylornithine deacetylase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=argE P... gi\|190906993, gi... - gi\|75240354\|ref\|ZP_00724294.1\| COG0624: Acetylornithine deacetylase/Succinyl-diaminopimelate desucci... ARGE_ECOL5 - Acetylornithine deacetylase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=argE PE=3 SV=1	325.0	[0..1]	[383..1]
ARGE_SHIBS - Acetylornithine deacetylase OS=Shigella boydii serotype 4 (strain Sb227) GN=argE PE=3 SV=1	325.0	[0..1]	[383..1]

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Predicted Domain #1

Region A:
Residues: [1-383]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNKLPPFIE IYRALIATPS ISATEEALDQ SNADLITLLA DWFKDLGFNV EVQPVPGTRN  60
   61 KFNMLASIGQ GAGGLLLAGH TDTVPFDDGR WTRDPFTLTE HDGKLYGLGT ADMKGFFAFI 120
  121 LDALRDVDVT KLKKPLYILA TADEETSMAG ARYFAETTAL RPDCAIIGEP TSLQPVRAHK 180
  181 GHISNAIRIQ GQSGHSSDPA RGVNAIELMH DAIGHILQLR DNLKERYHYE AFTVPYPTLN 240
  241 LGHIHGGDAS NRICACCELH MDIRPLPGMT LNELNGLLND ALAPVSERWP GRLTVDELHP 300
  301 PIPGYECPPN HQLVEVVEKL LGAKTEVVNY CTEAPFIQTL CPTLVLGPGS INQAHQPDEY 360
  361 LETRFIKPTR ELITQVIHHF CWH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	68.0
Match:	1vgyA
Description:	Crystal structure of succinyl diaminopimelate desuccinylase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
peptidase activity	3.04670233478854	bayes_pls_golite062009
hydrolase activity	2.99789273375574	bayes_pls_golite062009
peptidase activity, acting on L-amino acid peptides	2.34662162716729	bayes_pls_golite062009
catalytic activity	2.00064748759729	bayes_pls_golite062009
exopeptidase activity	1.03427114888237	bayes_pls_golite062009
carboxypeptidase activity	0.389857234977383	bayes_pls_golite062009
binding	0.194614097047728	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: