YRC Public Data Repository - Protein Structure Prediction

Protein:	ASMA_ECOLI
Organism:	Escherichia coli
Length:	617 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ASMA_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|187732274, gi... - gi\|75177184\|ref\|ZP_00697282.1\| COG2982: Uncharacterized protein involved in outer membrane biogenesi...	353.0	[0..1]	[617..1]
gi\|193062919, gi... - gi\|75259202\|ref\|ZP_00730550.1\| COG2982: Uncharacterized protein involved in outer membrane biogenesi...	353.0	[0..1]	[617..1]
gi\|218365714, gi... - gi\|218558945\|ref\|YP_002391858.1\| putative assembly protein [Escherichia coli S88], gi\|218365714\|emb\|... gi\|117624261, gi... - gi\|117624261\|ref\|YP_853174.1\| putative assembly protein [Escherichia coli APEC O1], gi\|115513385\|gb\|... gi\|91072927, gi\|... - gi\|91211353\|ref\|YP_541339.1\| putative assembly protein [Escherichia coli UTI89], gi\|91072927\|gb\|ABE0... gi\|237704521, gi... - gi\|237704521\|ref\|ZP_04535002.1\| AsmA protein [Escherichia sp. 3_2_53FAA], gi\|226900887\|gb\|EEH87146.1...	353.0	[0..1]	[617..1]
gi\|73856066, gi\|... - gi\|74312589\|ref\|YP_311008.1\| putative assembly protein [Shigella sonnei Ss046], gi\|73856066\|gb\|AAZ88...	353.0	[0..1]	[617..1]
gi\|24052476, gi\|... - gi\|24113448\|ref\|NP_707958.1\| putative assembly protein [Shigella flexneri 2a str. 301], gi\|24052476\|... gi\|30063513, gi\|... - gi\|30063513\|ref\|NP_837684.1\| putative assembly protein [Shigella flexneri 2a str. 2457T], gi\|3004176...	352.0	[0..1]	[617..1]
gi\|190901098, gi... - gi\|75227911\|ref\|ZP_00714615.1\| COG2982: Uncharacterized protein involved in outer membrane biogenesi...	352.0	[0..1]	[617..1]
gi\|81244851, gi\|... - gi\|82543440\|ref\|YP_407387.1\| putative assembly protein [Shigella boydii Sb227], gi\|81244851\|gb\|ABB65...	352.0	[0..1]	[617..1]
gi\|75236260, gi\|... - gi\|75236260\|ref\|ZP_00720369.1\| COG2982: Uncharacterized protein involved in outer membrane biogenesi... gi\|75210007, gi\|... - gi\|75210007\|ref\|ZP_00710190.1\| COG2982: Uncharacterized protein involved in outer membrane biogenesi...	351.0	[0..1]	[617..1]
gi\|15802546, gi\|... - gi\|15802546\|ref\|NP_288572.1\| suppressor of ompF assembly mutants [Escherichia coli O157:H7 EDL933], ... gi\|25364846 - pir\|\|B85833 suppressor of ompF assembly mutants [imported] - Escherichia coli (strain O157:H7, subst...	351.0	[0..1]	[617..1]
gi\|83571230, gi\|... - gi\|83571230\|ref\|ZP_00922671.1\| COG2982: Uncharacterized protein involved in outer membrane biogenesi...	351.0	[0..1]	[617..1]

Back

Predicted Domain #1

Region A:
Residues: [1-161]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRFLTTLMI LLVVLVAGLS ALVLLVNPND FRDYMVKQVA ARSGYQLQLD GPLRWHVWPQ  60
   61 LSILSGRMSL TAQGASQPLV RADNMRLDVA LLPLLSHQLS VKQVMLKGAV IQLTPQTEAV 120
  121 RSEDAPVAPR DNTLPDLSDD RGWSFDISSL KVADSVLVFQ H

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [162-317]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EDDEQVTIRN IRLQMEQDPQ HRGSFEFSGR VNRDQRDLTI SLNGTVDASD YPHDLTAAIE  60
   61 QINWQLQGAD LPKQGIQGQG SFQAQWQESH KRLSFNQISL TANDSTLSGQ AQVTLTEKPE 120
  121 WQLRLQFPQL NLDNLIPLNE TANGENGAAQ QGQSQS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [318-464]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TLPRPVISSR IDEPAYQGLQ GFTADILLQA SNVRWRGMNF TDVATQMTNK SGLLEITQLQ  60
   61 GKLNGGQVSL PGTLDATSIN PRINFQPRLE NVEIGTILKA FNYPISLTGK MSLAGDFSGA 120
  121 DIDADAFRHN WQGQAHVEMT DTRMEGM

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [465-617]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NFQQMIQQAV ERNGGDVKAA ENFDNVTRLD RFTTDLTLKD GVVTLNDMQG QSPVLALTGE  60
   61 GMLNLADQTC DTQFDIRVVG GWNGESKLID FLKETPVPLR VYGNWQQLNY SLQVDQLLRK 120
  121 HLQDEAKRRL NDWAERNKDS RNGKDVKKLL EKM

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits