Protein: | ATOS_ECOLI |
Organism: | Escherichia coli |
Length: | 608 amino acids |
Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ATOS_ECOLI.
Description | E-value | Query Range |
Subject Range |
|
362.0 | [0..5] | [604..31] |
|
362.0 | [0..1] | [608..5] |
|
362.0 | [0..1] | [608..1] |
|
362.0 | [0..1] | [608..5] |
|
362.0 | [0..1] | [608..1] |
|
361.0 | [0..1] | [608..1] |
|
358.0 | [0..4] | [608..1] |
|
357.0 | [0..4] | [608..1] |
|
356.0 | [0..4] | [608..1] |
|
350.0 | [0..16] | [604..1] |
Region A: Residues: [1-108] |
1 11 21 31 41 51 | | | | | | 1 MHYMKWIYPR RLRNQMILMA ILMVIVPTLT IGYIVETEGR SAVLSEKEKK LSAVVNLLNQ 60 61 ALGDRYDLYI DLPREERIRA LNAELAPITE NITHAFPGIG AGYYNKML |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
MCM Score |
SCOP Match |
SCOP Description | ||
View | Download | 0.891 | a.47.2 | t-snare proteins |
Region A: Residues: [109-241] |
1 11 21 31 41 51 | | | | | | 1 DAIITYAPSA LYQNNVGVTI AADHPGREVM RTNTPLVYSG RQVRGDILNS MLPIERNGEI 60 61 LGYIWANELT EDIRRQAWKM DVRIIIVLTA GLLISLLLIV LFSRRLSANI DIITDGLSTL 120 121 AQNIPTRLPQ LPG |
Detection Method: | |
Confidence: | 2.37 |
Match: | 2f95B |
Description: | M intermediate structure of sensory rhodopsin II/transducer complex in combination with the ground state structure |
Matching Structure (courtesy of the PDB): |
Region A: Residues: [242-379] |
1 11 21 31 41 51 | | | | | | 1 EMGQISQSVN NLAQALRETR TLNDLIIENA ADGVIAIDRQ GDVTTMNPAA EVITGYQRHE 60 61 LVGQPYSMLF DNTQFYSPVL DTLEHGTEHV ALEISFPGRD RTIELSVTTS RIHNTHGEMI 120 121 GALVIFSDLT ARKETQRR |
Detection Method: | |
Confidence: | 3.522879 |
Match: | 1v9yA |
Description: | Crystal Structure of the heme PAS sensor domain of Ec DOS (ferric form) |
Matching Structure (courtesy of the PDB): |
Term | Confidence | Notes |
ion transmembrane transporter activity | 1.94020112661684 | bayes_pls_golite062009 |
transcription regulator activity | 1.88422125389203 | bayes_pls_golite062009 |
binding | 1.79230776794479 | bayes_pls_golite062009 |
substrate-specific transmembrane transporter activity | 1.70629448457771 | bayes_pls_golite062009 |
cation transmembrane transporter activity | 1.55042643398568 | bayes_pls_golite062009 |
DNA binding | 1.54206275665781 | bayes_pls_golite062009 |
two-component response regulator activity | 1.45691562840107 | bayes_pls_golite062009 |
nucleic acid binding | 1.41817054839611 | bayes_pls_golite062009 |
metal ion transmembrane transporter activity | 1.31850321187865 | bayes_pls_golite062009 |
transcription factor activity | 1.12946889905444 | bayes_pls_golite062009 |
protein binding | 1.0133195984081 | bayes_pls_golite062009 |
potassium channel activity | 0.93265112299626 | bayes_pls_golite062009 |
voltage-gated ion channel activity | 0.92661046549451 | bayes_pls_golite062009 |
voltage-gated cation channel activity | 0.926512767264521 | bayes_pls_golite062009 |
voltage-gated potassium channel activity | 0.92204538811959 | bayes_pls_golite062009 |
voltage-gated channel activity | 0.91469735366704 | bayes_pls_golite062009 |
ion channel activity | 0.75430461252947 | bayes_pls_golite062009 |
cation channel activity | 0.73262554730695 | bayes_pls_golite062009 |
gated channel activity | 0.67217953143815 | bayes_pls_golite062009 |
substrate-specific channel activity | 0.650205954115699 | bayes_pls_golite062009 |
passive transmembrane transporter activity | 0.64202076714636 | bayes_pls_golite062009 |
channel activity | 0.64202076714636 | bayes_pls_golite062009 |
two-component sensor activity | 0.58151911764083 | bayes_pls_golite062009 |
protein histidine kinase activity | 0.56538125817883 | bayes_pls_golite062009 |
phosphotransferase activity, nitrogenous group as acceptor | 0.518111391350209 | bayes_pls_golite062009 |
signal transducer activity | 0.441034662376355 | bayes_pls_golite062009 |
molecular transducer activity | 0.441034662376355 | bayes_pls_golite062009 |
transporter activity | 0.360938622392148 | bayes_pls_golite062009 |
catalytic activity | 0.285447488878019 | bayes_pls_golite062009 |
transcription factor binding | 0.24293756478811 | bayes_pls_golite062009 |
transmembrane transporter activity | 0.217804199010847 | bayes_pls_golite062009 |
Region A: Residues: [380-608] |
1 11 21 31 41 51 | | | | | | 1 MAQAERLATL GELMAGVAHE VRNPLTAIRG YVQILRQQTS DPIHQEYLSV VLKEIDSINK 60 61 VIQQLLEFSR PRHSQWQQVS LNALVEETLV LVQTAGVQAR VDFISELDNE LSPINADREL 120 121 LKQVLLNILI NAVQAISARG KIRIQTWQYS DSQQAISIED NGCGIDLSLQ KKIFDPFFTT 180 181 KASGTGLGLA LSQRIINAHQ GDIRVASLPG YGATFTLILP INPQGNQTV |
Detection Method: | |
Confidence: | 50.154902 |
Match: | 2c2aA |
Description: | Structure of the entire cytoplasmic portion of a sensor histidine kinase protein |
Matching Structure (courtesy of the PDB): |