YRC Public Data Repository - Protein Structure Prediction

Protein:	ATP8_DANRE
Organism:	Danio rerio
Length:	54 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ATP8_DANRE.

Description	E-value	Query Range	Subject Range
gi\|4261977 - gi\|4261977\|gb\|AAD14277.1\|S78299_1 ATPase 8 [Cottus kesslerii]	85.0	[0..1]	[53..1]
gi\|32346941 - gi\|32346941\|gb\|AAP75409.1\| ATP synthase 8 [Pomacentrus brachialis]	83.0	[0..1]	[54..1]
gi\|32346950, gi\|... - gi\|32346953\|gb\|AAP75417.1\| ATP synthase 8 [Pomacentrus coelestis], gi\|32346950\|gb\|AAP75415.1\| ATP sy...	83.0	[0..1]	[54..1]
gi\|32346983, gi\|... - gi\|32346986\|gb\|AAP75439.1\| ATP synthase 8 [Pomacentrus nagasakiensis], gi\|32346983\|gb\|AAP75437.1\| AT... gi\|32347007, gi\|... - gi\|32347010\|gb\|AAP75455.1\| ATP synthase 8 [Pomacentrus reidi], gi\|32347007\|gb\|AAP75453.1\| ATP syntha... gi\|32346974 - gi\|32346974\|gb\|AAP75431.1\| ATP synthase 8 [Pomacentrus milleri]	83.0	[0..1]	[54..1]
gi\|25057352, gi\|... - gi\|25057352\|ref\|NP_739806.1\| ATP synthase F0 subunit 8 [Hypoatherina tsurugae], gi\|25005724\|dbj\|BAC2...	82.0	[0..1]	[54..1]
gi\|32346566, gi\|... - gi\|32346566\|gb\|AAP75159.1\| ATP synthase 8 [Amphiprion allardi], gi\|32346563\|gb\|AAP75157.1\| ATP synth...	82.0	[0..1]	[54..1]
gi\|12248141, gi\|... - gi\|12248141\|ref\|NP_073642.1\| ATP synthase F0 subunit 8 [Coregonus lavaretus], gi\|12082029\|dbj\|BAB207... gi\|14595676, gi\|... - gi\|14647170\|ref\|NP_148942.1\| ATP synthase F0 subunit 8 [Oncorhynchus tshawytscha], gi\|14595676\|gb\|AA... ATP8_SALSA - ATP synthase protein 8 OS=Salmo salar GN=mt-atp8 PE=3 SV=1 gi\|227808637, gi... - gi\|253729520\|ref\|YP_003029819.1\| ATP synthase F0 subunit 8 [Thymallus arcticus], gi\|227808637\|gb\|ACP... gi\|160949167 - gi\|160949167\|emb\|CAP40323.1\| ATPase subunit 8 [Salmo trutta trutta] ATP8_ONCMY - ATP synthase protein 8 OS=Oncorhynchus mykiss GN=mt-atp8 PE=3 SV=1 gi\|161333796 - gi\|161333796\|ref\|YP_001568975.1\| ATP synthase F0 subunit 8 [Salmo trutta trutta] gi\|226407503, gi... - gi\|253729506\|ref\|YP_003029806.1\| ATP synthase F0 subunit 8 [Thymallus thymallus], gi\|226407503\|gb\|AC... gi\|62161285, gi\|... - gi\|62161285\|ref\|YP_214905.1\| ATP synthase F0 subunit 8 [Oncorhynchus clarkii henshawi], gi\|58202179\|... gi\|190349305, gi... - gi\|190349305\|ref\|YP_001974505.1\| ATP synthase F0 subunit 8 [Oncorhynchus gorbuscha], gi\|134268933\|gb... gi\|117650164, gi... - gi\|118722293\|ref\|YP_908768.1\| ATP synthase F0 subunit 8 [Oncorhynchus nerka], gi\|117650164\|gb\|ABK540... gi\|117957325, gi... - gi\|134303138\|ref\|YP_001122891.1\| ATP synthase F0 subunit 8 [Oncorhynchus masou 'Biwa'], gi\|117957325... gi\|118412519, gi... - gi\|134303082\|ref\|YP_001122904.1\| ATP synthase F0 subunit 8 [Oncorhynchus kisutch], gi\|118412519\|gb\|A... gi\|110810358, gi... - gi\|120586729\|ref\|YP_961373.1\| ATP synthase F0 subunit 8 [Oncorhynchus masou masou], gi\|110810358\|gb\|... gi\|120586702, gi... - gi\|120586702\|ref\|YP_961360.1\| ATP synthase F0 subunit 8 [Oncorhynchus masou ishikawae], gi\|110810345...	82.0	[0..1]	[54..1]
gi\|32347019 - gi\|32347019\|gb\|AAP75461.1\| ATP synthase 8 [Pomacentrus trilineatus]	82.0	[0..1]	[54..1]
gi\|32347004, gi\|... - gi\|32347004\|gb\|AAP75451.1\| ATP synthase 8 [Pomacentrus philippinus], gi\|32347001\|gb\|AAP75449.1\| ATP ...	82.0	[0..1]	[54..1]

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Predicted Domain #1

Region A:
Residues: [1-54]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPQLNPKPWF MILFFSWVIF LTIIPTKIIN HIQPNDPTQV DAKEHKNDTW NWPW

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	16.275724
Match:	PF00895.11
Description:	No description for PF00895.11 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.485	N/A	N/A	a.16.1	S15/NS1 RNA-binding domain
View	Download	0.427	N/A	N/A	g.13.1	Crambin-like
View	Download	0.401	N/A	N/A	g.13.1	Crambin-like
View	Download	0.301	N/A	N/A	g.13.1	Crambin-like
View	Download	0.288	N/A	N/A	a.4.1	Homeodomain-like
View	Download	0.273	N/A	N/A	a.4.1	Homeodomain-like
View	Download	0.256	N/A	N/A	a.56.1	CO dehydrogenase ISP C-domain like
View	Download	0.248	N/A	N/A	a.4.1	Homeodomain-like
View	Download	0.244	N/A	N/A	d.43.1	Elongation factor Ts (EF-Ts), dimerisation domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits