YRC Public Data Repository - Protein Structure Prediction

Protein:	mt:ATPase8-PA
Organism:	Drosophila melanogaster
Length:	53 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mt:ATPase8-PA.

Description	E-value	Query Range	Subject Range
gi\|28273919, gi\|... - gi\|28273919\|gb\|AAO34318.1\| ATP synthase F0 subunit 8 [Megalagrion oresitrophum], gi\|28273915\|gb\|AAO3... gi\|28273931 - gi\|28273931\|gb\|AAO34327.1\| ATP synthase F0 subunit 8 [Megalagrion orobates]	65.0	[0..1]	[52..1]
ATP8_DROSE - ATP synthase protein 8 OS=Drosophila sechellia GN=mt:ATPase8 PE=3 SV=1	64.0	[0..1]	[53..1]
gi\|8573474, gi\|4... - gi\|8573516\|gb\|AAF77358.1\| ATPase 8 [Drosophila simulans], gi\|8573502\|gb\|AAF77345.1\| ATPase 8 [Drosop...	63.0	[0..1]	[53..1]
gi\|28273891, gi\|... - gi\|28273891\|gb\|AAO34297.1\| ATP synthase F0 subunit 8 [Megalagrion nigrohamatum nigrohamatum], gi\|282...	63.0	[0..1]	[52..1]
ATP8_AEDAL - ATP synthase protein 8 OS=Aedes albopictus GN=mt:ATPase8 PE=3 SV=1	62.0	[0..1]	[53..1]
AGAP028369-PA - ATP synthase protein 8 \|protein_coding\|Mt:3868-4029:1\|gene:AGAP028369 ATP8_ANOGA - ATP synthase protein 8 OS=Anopheles gambiae GN=mt:ATPase8 PE=3 SV=1	62.0	[0..1]	[53..1]
gi\|223702 - gi\|223702\|prf\|\|0908303E protein URF A6L	62.0	[0..1]	[53..1]
ATP8_DROYA - ATP synthase protein 8 OS=Drosophila yakuba GN=mt:ATPase8 PE=3 SV=1 gi\|186911341 - gi\|186911341\|gb\|ACC94824.1\| ATPase 8 [Drosophila baimaii]	62.0	[0..1]	[53..1]
gi\|13435205, gi\|... - gi\|13435205\|ref\|NP_085085.1\|ATP8_15618 ATP synthase F0 subunit 8 [Chrysomya putoria], gi\|13384221\|gb...	61.0	[0..1]	[53..1]

Back

Predicted Domain #1

Region A:
Residues: [1-53]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPQMAPISWL LLFIIFSITF ILFCSINYYS YMPNSPKSNE LKNINLNSMN WKW

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	9.60206
Match:	PF00895.11
Description:	No description for PF00895.11 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.615	N/A	N/A	a.5.1	DNA helicase RuvA subunit, C-terminal domain
View	Download	0.615	N/A	N/A	a.5.1	DNA helicase RuvA subunit, C-terminal domain
View	Download	0.456	N/A	N/A	a.46.2	Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
View	Download	0.456	N/A	N/A	a.46.2	Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
View	Download	0.410	N/A	N/A	a.2.12	Description not found.
View	Download	0.398	N/A	N/A	a.8.1	Bacterial immunoglobulin/albumin-binding domains
View	Download	0.383	N/A	N/A	a.10.2	Description not found.
View	Download	0.335	N/A	N/A	a.4.1	Homeodomain-like
View	Download	0.332	N/A	N/A	a.5.1	DNA helicase RuvA subunit, C-terminal domain
View	Download	0.332	N/A	N/A	a.5.2	UBA-like
View	Download	0.314	N/A	N/A	a.5.7	4-hydroxy-2-oxovalerate aldolase DmpG, communication domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits