YRC Public Data Repository - Protein Structure Prediction

Protein:	CCAP_MANSE
Organism:	Manduca sexta
Length:	125 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CCAP_MANSE.

Description	E-value	Query Range	Subject Range
gi\|157106157, gi... - gi\|157106157\|ref\|XP_001649193.1\| cardioacceleratory peptide 2a, putative [Aedes aegypti], gi\|1088841...	157.0	[0..1]	[122..1]
gi\|91077426 - gi\|91077426\|ref\|XP_975431.1\| PREDICTED: similar to crustacean cardioactive peptide [Tribolium castan...	142.0	[0..1]	[122..1]
AGAP009729-PA - CCAP: cardioacceleratory peptide\|protein_coding\|3R:41853237:41853793:1\|gene:AGAP009729 gi\|116118097, gi... - gi\|118790772\|ref\|XP_318812.3\| cardioacceleratory peptide (AGAP009729-PA) [Anopheles gambiae str. PES...	140.0	[0..3]	[122..2]
gi\|3273884 - gi\|3273884\|gb\|AAC24871.1\| cardioacceleratory peptide 2a [Manduca sexta]	139.0	[0..39]	[125..1]
gi\|125773739, gi... - gi\|54637863\|gb\|EAL27265.1\| GA18518-PA [Drosophila pseudoobscura], gi\|125773739\|ref\|XP_001358128.1\| G...	135.0	[0..32]	[125..35]
gi\|7300905, gi\|5... - gi\|7300905\|gb\|AAF56045.1\| CG4910-PA [Drosophila melanogaster], gi\|51701360\|sp\|Q9VCW0.1\|CCAP_DROME Re...	131.0	[0..32]	[125..35]
gi\|78523090 - gi\|78523090\|gb\|ABB46290.1\| crustacean cardioactive peptide [Callinectes sapidus]	128.0	[0..9]	[125..20]
gi\|78523092 - gi\|78523092\|gb\|ABB46291.1\| crustacean cardioactive peptide [Carcinus maenas]	127.0	[0..9]	[125..20]

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Predicted Domain #1

Region A:
Residues: [1-125]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVSRVCLLL LVALVYLDCC YAASIPRNFD PRLSEEIVMA PKKRPFCNAF TGCGRKRSQG  60
   61 PPGMPAQDLR TKQYLDEEAL GSILDSESAI DELSRQILSE AKLWEAIQEA SAEIARRKQK 120
  121 EAYIQ

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.652	a.249.1	Description not found.
View	Download	0.599	a.25.1	Ferritin-like
View	Download	0.286	a.121.1	Tetracyclin repressor-like, C-terminal domain
View	Download	0.267	a.25.1	Ferritin-like
View	Download	0.265	d.58.4	Dimeric alpha+beta barrel
View	Download	0.240	a.24.17	Group V grass pollen allergen

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits