YRC Public Data Repository - Protein Structure Prediction

Protein:	CCKNA_XENLA
Organism:	Xenopus laevis
Length:	123 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CCKNA_XENLA.

Description	E-value	Query Range	Subject Range
CCKN_LITCT - Cholecystokinin OS=Lithobates catesbeiana GN=CCK PE=1 SV=2	181.0	[0..1]	[123..1]
CCKN_STRCA - Cholecystokinin OS=Struthio camelus GN=CCK PE=1 SV=1	180.0	[0..1]	[123..1]
CCKN_TRASC - Cholecystokinin OS=Trachemys scripta PE=1 SV=2	175.0	[0..1]	[123..1]
CCKNB_XENLA - Cholecystokinin B OS=Xenopus laevis GN=cck-b PE=2 SV=1	173.0	[0..1]	[123..1]
gi\|55620065 - gi\|55620065\|ref\|XP_516386.1\| PREDICTED: cholecystokinin isoform 2 [Pan troglodytes]	169.0	[0..1]	[123..1]
gi\|30584119, gi\|... - gi\|60653099\|gb\|AAX29244.1\| cholecystokinin [synthetic construct], gi\|60653097\|gb\|AAX29243.1\| cholecy...	169.0	[0..1]	[123..1]
CCK - cholecystokinin gi\|157927968, gi... - gi\|60656149\|gb\|AAX32638.1\| cholecystokinin [synthetic construct], gi\|60656147\|gb\|AAX32637.1\| cholecy...	169.0	[0..1]	[123..1]
CCKN_CHICK - Cholecystokinin OS=Gallus gallus GN=CCK PE=1 SV=1	167.0	[0..1]	[123..1]
CCKN_MOUSE - Cholecystokinin OS=Mus musculus GN=Cck PE=1 SV=3	166.0	[0..1]	[123..1]
gi\|69380 - pir\|\|GMPGCP cholecystokinin precursor - pig CCKN_PIG - Cholecystokinin OS=Sus scrofa GN=CCK PE=1 SV=1	165.0	[0..1]	[123..1]

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Predicted Domain #1

Region A:
Residues: [1-123]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYSGICICLL LAMLSASSKA HQSEDAVVTE MDQLTLSQLP RYARASSAGQ KKSFQRTDGD  60
   61 QRSNIGNVLV KYLQQSRKAG PSGRYVVLPN RPIFDQPHRI NDRDYMGWMD FGRRSAEEYE 120
  121 YSS

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	53.267606
Match:	PF00918.8
Description:	No description for PF00918.8 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits