YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: CCKNB_XENLA
Organism: Xenopus laevis
Length: 128 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CCKNB_XENLA.

Description E-value Query
Range
Subject
Range
CCKN_LITCT - Cholecystokinin OS=Lithobates catesbeiana GN=CCK PE=1 SV=2
190.0 [0..1] [128..1]
CCKNA_XENLA - Cholecystokinin A OS=Xenopus laevis GN=cck-a PE=2 SV=1
173.0 [0..1] [128..1]
CCKN_TRASC - Cholecystokinin OS=Trachemys scripta PE=1 SV=2
173.0 [0..1] [128..1]
CCKN_STRCA - Cholecystokinin OS=Struthio camelus GN=CCK PE=1 SV=1
172.0 [0..1] [128..1]
CCKN_CHICK - Cholecystokinin OS=Gallus gallus GN=CCK PE=1 SV=1
161.0 [0..1] [128..1]
gi|2246429 - gi|2246429|emb|CAB10585.1| preprocholecystokinin [Squalus acanthias]
158.0 [0..1] [128..1]
CCKN_MOUSE - Cholecystokinin OS=Mus musculus GN=Cck PE=1 SV=3
158.0 [0..1] [128..1]
CCKN_RAT - Cholecystokinin OS=Rattus norvegicus GN=Cck PE=1 SV=1
157.0 [0..1] [128..1]

Back

Predicted Domain #1
Region A:
Residues: [1-128]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCSGVCICLL LAMLSASSKA HQATGSLGED AVGTEMDQLN LSQLPRYARA SSAGQKKSFQ  60
   61 RTDGDQRSNI GNALVKYLQQ SRKAGPSGRY VVLPNRPIFD QSHRINDRDY MGWMDFGRRS 120
  121 AEEYEYSS

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 53.886057
Match: PF00918.8
Description: No description for PF00918.8 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle