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View Structure Prediction Details

Protein: CCKN_LITCT
Organism: Rana catesbeiana
Length: 130 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CCKN_LITCT.

Description E-value Query
Range
Subject
Range
CCKN_STRCA - Cholecystokinin OS=Struthio camelus GN=CCK PE=1 SV=1
190.0 [0..1] [130..1]
CCKN_TRASC - Cholecystokinin OS=Trachemys scripta PE=1 SV=2
188.0 [0..1] [130..1]
CCKN_CHICK - Cholecystokinin OS=Gallus gallus GN=CCK PE=1 SV=1
177.0 [0..1] [130..1]
CCKNB_XENLA - Cholecystokinin B OS=Xenopus laevis GN=cck-b PE=2 SV=1
171.0 [0..1] [130..1]
CCK_PYTMO - Cholecystokinin-8 OS=Python molurus GN=CCK PE=2 SV=1
166.0 [0..1] [130..1]
gi|2246429 - gi|2246429|emb|CAB10585.1| preprocholecystokinin [Squalus acanthias]
165.0 [0..1] [130..1]
gi|38198207 - gi|38198207|dbj|BAD01500.1| cholecystokinin [Anguilla japonica]
163.0 [0..1] [130..1]
gi|69380 - pir||GMPGCP cholecystokinin precursor - pig
CCKN_PIG - Cholecystokinin OS=Sus scrofa GN=CCK PE=1 SV=1
154.0 [0..1] [130..1]

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Predicted Domain #1
Region A:
Residues: [1-130]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYIGICICVL LAALSASSTG QQTVGSMNED PGAREIEQQN ILQHPRHIRA SSSAQLKPFQ  60
   61 RIDGTSDQKA VIGAMLAKYL QTRKAGSSTG RYAVLPNRPV IDPTHRINDR DYMGWMDFGR 120
  121 RSAEEYEYSS 

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 36.920819
Match: PF00918.8
Description: No description for PF00918.8 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle