YRC Public Data Repository - Protein Structure Prediction

Protein:	CCKN_TRASC
Organism:	Trachemys scripta
Length:	130 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CCKN_TRASC.

Description	E-value	Query Range	Subject Range
CCKN_STRCA - Cholecystokinin OS=Struthio camelus GN=CCK PE=1 SV=1	209.0	[0..1]	[130..1]
CCKN_CHICK - Cholecystokinin OS=Gallus gallus GN=CCK PE=1 SV=1	197.0	[0..1]	[130..1]
CCKN_LITCT - Cholecystokinin OS=Lithobates catesbeiana GN=CCK PE=1 SV=2	185.0	[0..1]	[130..1]
gi\|2246429 - gi\|2246429\|emb\|CAB10585.1\| preprocholecystokinin [Squalus acanthias]	178.0	[0..1]	[130..1]
CCK_PYTMO - Cholecystokinin-8 OS=Python molurus GN=CCK PE=2 SV=1	176.0	[0..1]	[130..1]
gi\|38198207 - gi\|38198207\|dbj\|BAD01500.1\| cholecystokinin [Anguilla japonica]	167.0	[0..1]	[130..1]
CCKNB_XENLA - Cholecystokinin B OS=Xenopus laevis GN=cck-b PE=2 SV=1	166.0	[0..1]	[130..1]
gi\|55620065 - gi\|55620065\|ref\|XP_516386.1\| PREDICTED: cholecystokinin isoform 2 [Pan troglodytes]	161.0	[0..1]	[130..1]
gi\|30584119, gi\|... - gi\|60653099\|gb\|AAX29244.1\| cholecystokinin [synthetic construct], gi\|60653097\|gb\|AAX29243.1\| cholecy...	160.0	[0..1]	[130..1]

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Predicted Domain #1

Region A:
Residues: [1-130]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYSGICIYMF LAMLSTSSSG QQATGSHNEN PVATELEQSL TEHHRHVRVP SSAGQLKPIQ  60
   61 RLDGNVDQKA NIGALLAKYL QQARKGPTGR ISMMGNRVQN IDPTHRINDR DYMGWMDFGR 120
  121 RSAEEYEYSS

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	48.142668
Match:	PF00918.8
Description:	No description for PF00918.8 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.349	N/A	N/A	a.60.10	Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain
View	Download	0.349	N/A	N/A	a.60.10	Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain
View	Download	0.311	N/A	N/A	a.24.18	Description not found.
View	Download	0.250	N/A	N/A	a.1.1	Globin-like
View	Download	0.250	N/A	N/A	a.1.1	Globin-like
View	Download	0.247	N/A	N/A	a.27.1	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
View	Download	0.247	N/A	N/A	a.27.1	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
View	Download	0.243	N/A	N/A	a.80.1	DNA polymerase III clamp loader subunits, C-terminal domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits