YRC Public Data Repository - Protein Structure Prediction

Protein:	CD59_CALSQ
Organism:	Callithrix sp.
Length:	128 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CD59_CALSQ.

Description	E-value	Query Range	Subject Range
gi\|61361922, gi\|... - gi\|61361922\|gb\|AAX42127.1\| CD59 antigen [synthetic construct], gi\|61361917\|gb\|AAX42126.1\| CD59 antig... CD59 - CD59 molecule, complement regulatory protein	170.0	[0..1]	[128..1]
gi\|60653791, gi\|... - gi\|60653793\|gb\|AAX29590.1\| CD59 antigen p18-20 [synthetic construct], gi\|60653791\|gb\|AAX29589.1\| CD5...	170.0	[0..1]	[128..1]
CD59_PONAB - CD59 glycoprotein OS=Pongo abelii GN=CD59 PE=2 SV=1 CD59_PONPY - CD59 glycoprotein precursor - Pongo pygmaeus (Orangutan)	169.0	[0..1]	[128..1]
gi\|90077478 - gi\|90077478\|dbj\|BAE88419.1\| unnamed protein product [Macaca fascicularis] gi\|109106850, gi... - gi\|109106854\|ref\|XP_001083003.1\| PREDICTED: similar to CD59 antigen p18-20 isoform 4 [Macaca mulatta...	163.0	[0..1]	[128..1]
CD59_AOTTR - CD59 glycoprotein OS=Aotus trivirgatus GN=CD59 PE=3 SV=1	163.0	[0..1]	[128..1]
CD59_MACFA - CD59 glycoprotein OS=Macaca fascicularis GN=CD59 PE=2 SV=1	162.0	[0..1]	[128..1]
gi\|114636912 - gi\|114636912\|ref\|XP_001140212.1\| PREDICTED: similar to precursor polypeptide (AA -25 to 103) [Pan tr...	154.0	[0..1]	[104..154]
CD59_SAISC - CD59 glycoprotein OS=Saimiri sciureus GN=CD59 PE=2 SV=1	152.0	[0..1]	[128..1]

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Predicted Domain #1

Region A:
Residues: [1-128]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGIQGGSVLF GLLLILAVFC HSGHSLQCYS CPYSTARCTT TTNCTSNLDS CLIAKAGLRV  60
   61 YYRCWKFEDC TFRQLSNQLS ENELKYHCCR ENLCNFNGIL ENGGTTLSKK TVLLLVTPFL 120
  121 AAAWSLHP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	20.09691
Match:	2j8bA
Description:	No description for 2j8bA was found.

Predicted functions:

Term	Confidence	Notes
receptor activity	2.70083456904638	bayes_pls_golite062009
U-plasminogen activator receptor activity	2.67622889349209	bayes_pls_golite062009
signal transducer activity	2.48263944107373	bayes_pls_golite062009
molecular transducer activity	2.48263944107373	bayes_pls_golite062009
binding	1.78861011884769	bayes_pls_golite062009
growth factor binding	1.43582806978958	bayes_pls_golite062009
cytokine binding	1.30600639196836	bayes_pls_golite062009
protein binding	1.22727766276611	bayes_pls_golite062009
receptor binding	1.17689017024912	bayes_pls_golite062009
transforming growth factor beta binding	0.855590728274459	bayes_pls_golite062009
receptor serine/threonine kinase binding	0.50636160522572	bayes_pls_golite062009
pattern binding	0.21003196804615	bayes_pls_golite062009
glycosaminoglycan binding	0.12571671769483	bayes_pls_golite062009
polysaccharide binding	0.0522124179603294	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: