YRC Public Data Repository - Protein Structure Prediction

Protein:	CHO_ECOLI
Organism:	Escherichia coli
Length:	295 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CHO_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|192925962, gi... - gi\|75255512\|ref\|ZP_00727304.1\| COG0322: Nuclease subunit of the excinuclease complex [Escherichia co... UVRC_ECOLC - UvrABC system protein C OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=uvrC PE=3 SV=1 gi\|194412021, gi... - gi\|75208839\|ref\|ZP_00709123.1\| COG0322: Nuclease subunit of the excinuclease complex [Escherichia co... gi\|124531455, gi... - gi\|124531455\|ref\|ZP_01701739.1\| excinuclease ABC, C subunit [Escherichia coli B], gi\|124498570\|gb\|EA... gi\|195182997 - gi\|195182997\|dbj\|BAG66563.1\| endonuclease subunit of excinuclease UvrABC [Escherichia coli O111:H-]	356.0	[0..19]	[293..2]
UVRC_ECOBW - UvrABC system protein C OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=uvrC PE=3 SV=1 gi\|253324179, gi... - gi\|253773135\|ref\|YP_003035966.1\| excinuclease ABC, C subunit [Escherichia coli BL21(DE3)], gi\|253324... gi\|254793563, gi... - gi\|254793563\|ref\|YP_003078400.1\| excinuclease UvrABC, endonuclease subunit [Escherichia coli O157:H7... gi\|194421508, gi... - gi\|83585049\|ref\|ZP_00923703.1\| COG0322: Nuclease subunit of the excinuclease complex [Escherichia co... UVRC_ECO24 - UvrABC system protein C OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=uvrC PE=3 SV=1 UVRC_ECO7I - UvrABC system protein C OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=uvrC PE=3 SV=1 UVRC_ECO55 - UvrABC system protein C OS=Escherichia coli (strain 55989 / EAEC) GN=uvrC PE=3 SV=1 UVRC_ECOLU - UvrABC system protein C OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=uvrC PE=3 SV=1 UVRC_ECOLI - UvrABC system protein C (Protein uvrC) (Excinuclease ABC subunit C) - Escherichia coli UVRC_SHISS - UvrABC system protein C OS=Shigella sonnei (strain Ss046) GN=uvrC PE=3 SV=2 UVRC_ECOL6 - UvrABC system protein C OS=Escherichia coli O6 GN=uvrC PE=3 SV=1 sp\|B7UST2\|UVRC_ECO27 - UvrABC system protein C OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=uvrC PE=3 SV=1 gi\|89108748, gi\|... - gi\|89108748\|ref\|AP_002528.1\| excinuclease UvrABC, endonuclease subunit [Escherichia coli str. K-12 s... gi\|38704033 - gi\|38704033\|ref\|NP_310678.2\| excinuclease ABC subunit C [Escherichia coli O157:H7 str. Sakai] UVRC_ECOL6 - UvrABC system protein C OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=uvrC PE=3 ... UVRC_ECO57 - UvrABC system protein C OS=Escherichia coli O157:H7 GN=uvrC PE=3 SV=1 EG11063 - excinuclease UvrABC, endonuclease subunit / Excision nuclease subunit C; repair of UV damage to DNA;... gi\|208731333, gi... - gi\|208816990\|ref\|ZP_03258110.1\| excinuclease ABC, C subunit [Escherichia coli O157:H7 str. EC4045], ... UVRC_ECODH - UvrABC system protein C OS=Escherichia coli (strain K12 / DH10B) GN=uvrC PE=3 SV=1 UVRC_ECOSE - UvrABC system protein C OS=Escherichia coli (strain SE11) GN=uvrC PE=3 SV=1 UVRC_ECO5E - UvrABC system protein C OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=uvrC PE=3 SV=1 gi\|217328731, gi... - gi\|217328731\|ref\|ZP_03444812.1\| excinuclease ABC, C subunit [Escherichia coli O157:H7 str. TW14588],... UVRC_ECO27 - UvrABC system protein C OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=uvrC PE=3 SV=1 UVRC_ECO81 - UvrABC system protein C OS=Escherichia coli O81 (strain ED1a) GN=uvrC PE=3 SV=1 UVRC_ECO8A - UvrABC system protein C OS=Escherichia coli O8 (strain IAI1) GN=uvrC PE=3 SV=1 EG11063 - excinuclease UvrABC, endonuclease subunit / Excision nuclease subunit C; repair of UV damage to DNA;... UVRC_ECOHS - UvrABC system protein C OS=Escherichia coli O9:H4 (strain HS) GN=uvrC PE=3 SV=1 gi\|193071134, gi... - gi\|75233961\|ref\|ZP_00718414.1\| COG0322: Nuclease subunit of the excinuclease complex [Escherichia co... gi\|191173286, gi... - gi\|75239189\|ref\|ZP_00723166.1\| COG0322: Nuclease subunit of the excinuclease complex [Escherichia co... gi\|188495148, gi... - gi\|75511465\|ref\|ZP_00734140.1\| COG0322: Nuclease subunit of the excinuclease complex [Escherichia co... gi\|161367590 - gi\|161367590\|ref\|NP_288374.2\| excinuclease ABC subunit C [Escherichia coli O157:H7 EDL933] gi\|189375231, gi... - gi\|189375231\|gb\|EDU93647.1\| excinuclease ABC, C subunit [Escherichia coli O157:H7 str. EC508], gi\|16... gi\|189370222, gi... - gi\|189370222\|gb\|EDU88638.1\| excinuclease ABC, C subunit [Escherichia coli O157:H7 str. EC869], gi\|16... gi\|227837234, gi... - gi\|227885661\|ref\|ZP_04003466.1\| excinuclease ABC subunit C [Escherichia coli 83972], gi\|227837234\|gb...	356.0	[0..19]	[293..2]
gi\|237705868, gi... - gi\|237705868\|ref\|ZP_04536349.1\| excinuclease ABC subunit C [Escherichia sp. 3_2_53FAA], gi\|226900625... UVRC_ECOUT - UvrABC system protein C OS=Escherichia coli (strain UTI89 / UPEC) GN=uvrC PE=3 SV=1	356.0	[0..19]	[293..2]
UVRC_ECOK1 - UvrABC system protein C OS=Escherichia coli O1:K1 / APEC GN=uvrC PE=3 SV=1	356.0	[0..19]	[293..2]
gi\|75228527 - gi\|75228527\|ref\|ZP_00715164.1\| COG0322: Nuclease subunit of the excinuclease complex [Escherichia co...	356.0	[0..19]	[293..2]
UVRC_SHIB3 - UvrABC system protein C OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=uvrC PE=3 SV=...	355.0	[0..19]	[293..2]
gi\|88796926, gi\|... - gi\|88796926\|ref\|ZP_01112546.1\| excinuclease ABC subunit C [Alteromonas macleodii 'Deep ecotype'], gi...	354.0	[0..26]	[293..8]
UVRC_HAES1 - UvrABC system protein C OS=Haemophilus somnus (strain 129Pt) GN=uvrC PE=3 SV=1	353.0	[0..25]	[293..5]
UVRC_HISS2 - UvrABC system protein C OS=Histophilus somni (strain 2336) GN=uvrC PE=3 SV=1	353.0	[0..25]	[293..5]
UVRC_SALTY - UvrABC system protein C OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=uvrC PE=3... UVRC_SALTY - UvrABC system protein C OS=Salmonella typhimurium GN=uvrC PE=3 SV=2 UVRC_SALTY - UvrABC system protein C OS=Salmonella typhimurium GN=uvrC PE=3 SV=2	350.0	[0..25]	[293..8]

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Predicted Domain #1

Region A:
Residues: [1-133]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVRRLTSPRL EFEAAAIYEY PEHLRSFLND LPTRPGVYLF HGESDTMPLY IGKSVNIRSR  60
   61 VLSHLRTPDE AAMLRQSRRI SWICTAGEIG ALLLEARLIK EQQPLFNKRL RRNRQLCALQ 120
  121 LNEKRVDVVY AKE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	33.69897
Match:	1yd6A
Description:	Crystal structure of the GIY-YIG N-terminal endonuclease domain of UvrC from Bacillus caldotenax
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [134-295]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VDFSRAPNLF GLFANRRAAL QALQTIADEQ KLCYGLLGLE PLSRGRACFR SALKRCAGAC  60
   61 CGKESHEEHA LRLRQSLERL RVVCWPWQGA VALKEQHPEM TQYHIIQNWL WLGAVNSLEE 120
  121 ATTLIRTPAG FDHDGYKILC KPLLSGNYEI TELDPANDQR AS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	5.69897
Match:	1d2mA
Description:	Nucleotide excision repair enzyme UvrB
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits