YRC Public Data Repository - Protein Structure Prediction

Protein:	COL_PIG
Organism:	Sus scrofa
Length:	112 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for COL_PIG.

Description	E-value	Query Range	Subject Range
gi\|60653547, gi\|... - gi\|60653547\|gb\|AAX29467.1\| colipase pancreatic [synthetic construct], gi\|60653545\|gb\|AAX29466.1\| col...	192.0	[0..1]	[112..1]
gi\|61361211 - gi\|61361211\|gb\|AAX42012.1\| colipase pancreatic [synthetic construct] HGNC:2085\|MIM:12... - pancreatic, pancreatic gi\|55627942 - gi\|55627942\|ref\|XP_527612.1\| PREDICTED: similar to pancreatic colipase preproprotein isoform 3 [Pan ... CLPS - colipase, pancreatic	191.0	[0..1]	[112..1]
gi\|109070883 - gi\|109070883\|ref\|XP_001116700.1\| PREDICTED: similar to Colipase precursor [Macaca mulatta]	188.0	[0..1]	[108..1]
gi\|76650030 - gi\|76650030\|ref\|XP_604282.2\| PREDICTED: similar to Colipase precursor [Bos taurus]	174.0	[0..19]	[112..19]
COLA_HORSE - Colipase A (Fragment) OS=Equus caballus GN=CLPS1 PE=1 SV=2	171.0	[0..7]	[112..1]
COL_CANLF - Colipase OS=Canis lupus familiaris GN=CLPS PE=2 SV=1	162.0	[0..1]	[112..1]
COL_ICTTR - Colipase OS=Ictidomys tridecemlineatus GN=CLPS PE=2 SV=1	160.0	[0..16]	[112..15]
COL_MOUSE - Colipase OS=Mus musculus GN=Clps PE=1 SV=1	158.0	[0..16]	[112..17]

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Predicted Domain #1

Region A:
Residues: [1-112]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKVLALLLV TLTVAYAVPD PRGIIINLDE GELCLNSAQC KSNCCQHDTI LSLSRCALKA  60
   61 RENSECSAFT LYGVYYKCPC ERGLTCEGDK SLVGSITNTN FGICHDVGRS SD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	39.0
Match:	1ethB
Description:	(Pro)colipase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits