YRC Public Data Repository - Protein Structure Prediction

Protein:	COPC_PSEUB
Organism:	Pseudomonas syringae pv. tomato
Length:	126 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for COPC_PSEUB.

Description	E-value	Query Range	Subject Range
gi\|63255449, gi\|... - gi\|66044742\|ref\|YP_234583.1\| copper resistance protein CopC [Pseudomonas syringae pv. syringae B728a...	145.0	[0..1]	[126..1]
gi\|32815825 - gi\|32815825\|gb\|AAP88297.1\| CopC [Pseudomonas putida]	141.0	[0..3]	[126..1]
gi\|48729978, gi\|... - gi\|77460034\|ref\|YP_349541.1\| copper resistance protein CopC [Pseudomonas fluorescens Pf0-1], gi\|7738...	139.0	[0..3]	[126..1]
gi\|8272381 - gi\|8272381\|dbj\|BAA96440.1\| ORFC [Pseudomonas syringae]	137.0	[0..2]	[126..3]
gi\|21959393, gi\|... - gi\|22126405\|ref\|NP_669828.1\| hypothetical protein y2523 [Yersinia pestis KIM], gi\|21959393\|gb\|AAM860... gi\|45436286, gi\|... - gi\|45441425\|ref\|NP_992964.1\| hypothetical protein YP_1608 [Yersinia pestis biovar Microtus str. 9100...	134.0	[0..5]	[126..64]
gi\|52784300, gi\|... - gi\|52784300\|ref\|YP_090129.1\| YcnJ [Bacillus licheniformis ATCC 14580], gi\|52346802\|gb\|AAU39436.1\| Yc...	134.0	[0..2]	[125..3]
gi\|49184786, gi\|... - gi\|49184786\|ref\|YP_028038.1\| hypothetical protein BAS1774 [Bacillus anthracis str. Sterne], gi\|49178... gi\|47502355, gi\|... - gi\|47527207\|ref\|YP_018556.1\| hypothetical protein GBAA1912 [Bacillus anthracis str. 'Ames Ancestor']... gi\|30261944, gi\|... - gi\|30261944\|ref\|NP_844321.1\| hypothetical protein BA1912 [Bacillus anthracis str. Ames], gi\|30256570...	131.0	[0..3]	[125..1]
gi\|68526905, gi\|... - gi\|94152516\|ref\|YP_581923.1\| copper resistance protein CopC [Ralstonia metallidurans CH34], gi\|93358...	129.0	[0..23]	[126..28]
gi\|52143504, gi\|... - gi\|52143504\|ref\|YP_083326.1\| copper resistance protein [Bacillus cereus E33L], gi\|51976973\|gb\|AAU185...	128.0	[0..2]	[125..3]

Back

Predicted Domain #1

Region A:
Residues: [1-126]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLNRTSFVT LFAAGMLVSA LAQAHPKLVS STPAEGSEGA APAKIELHFS ENLVTQFSGA  60
   61 KLVMTAMPGM EHSPMAVKAA VSGGGDPKTM VITPASPLTA GTYKVDWRAV SSDTHPITGS 120
  121 VTFKVK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.221849
Match:	1m42A
Description:	Copper resistance protein C (CopC, PcoC)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits